From openmed-skills
Scans de-identified clinical text for residual identifiers using pattern detectors (SSN, credit card, phone, email, MRN) and entropy heuristics, emitting a leakage report that blocks release on any hit.
How this skill is triggered — by the user, by Claude, or both
Slash command
/openmed-skills:auditing-deid-leakageThe summary Claude sees in its skill listing — used to decide when to auto-load this skill
De-identification is **verified, not assumed**. A model-driven redaction can
De-identification is verified, not assumed. A model-driven redaction can miss a structured identifier (an SSN typo'd with spaces, an account number in a footer, a date in an odd format) — and a single residual identifier defeats the whole release. This skill is the adversarial second pass: scan the output of de-identification for anything that still looks like an identifier, score it, and block release on any leak. It is the verification half of OpenMed's leakage-first ethos — gate on leakage, not on F1.
deidentifying-clinical-text, before the de-identified text leaves
a trust boundary (export, share, train, publish).Run this on the de-identified text, not the original. The original is expected to be full of identifiers.
Two complementary passes — a deterministic structural scan plus a model second-pass diff:
import re
import openmed
# Synthetic — the de-identified OUTPUT we are auditing for residual leaks.
deid_text = "Patient [NAME] seen on [DATE]. Backup contact 415-555-0184; acct 4111111111111111."
def luhn_ok(digits: str) -> bool:
nums = [int(d) for d in digits]
nums[-2::-2] = [(2 * d - 9 if 2 * d > 9 else 2 * d) for d in nums[-2::-2]]
return sum(nums) % 10 == 0
DETECTORS = {
"SSN": (r"\b\d{3}-\d{2}-\d{4}\b", "critical", None),
"EMAIL": (r"\b[\w.+-]+@[\w-]+\.[\w.-]+\b", "high", None),
"PHONE": (r"\b(?:\+?1[-.\s]?)?\(?\d{3}\)?[-.\s]?\d{3}[-.\s]?\d{4}\b", "high", None),
"DATE": (r"\b\d{1,2}[/-]\d{1,2}[/-]\d{2,4}\b", "medium", None),
"MRN": (r"\bMRN[:#\s]*\d{5,}\b", "high", None),
"CARD": (r"\b(?:\d[ -]?){13,19}\b", "critical", luhn_ok), # checksum-gated
}
findings = []
for label, (pattern, severity, checksum) in DETECTORS.items():
for m in re.finditer(pattern, deid_text, flags=re.IGNORECASE):
token = m.group()
if checksum and not checksum(re.sub(r"\D", "", token)):
continue # fails Luhn -> not a real card number, skip
findings.append({"label": label, "severity": severity,
"start": m.start(), "end": m.end()}) # offsets, not text
# Second-pass model detector: re-run PII extraction on the de-id output.
residual = openmed.extract_pii(deid_text) # PredictionResult
for ent in residual.entities:
findings.append({"label": ent.label, "severity": "high",
"start": ent.start, "end": ent.end})
leaked = bool(findings)
print({"leak": leaked, "count": len(findings)}) # report carries NO plaintext
assert not leaked, "Release BLOCKED: residual identifiers detected."
Note what the report records: labels, severities, and offsets — never the leaked plaintext. Echoing the leaked identifier into a report or log re-creates the exact PHI exposure you are auditing for.
openmed.extract_pii on the output and
treat any returned entity as a residual leak. Because it's a different
detector than the one that did the redaction, it catches different misses.findings is
non-empty at high/critical, fail the export. Surface a no-PHI report
(counts + offsets + severities) so a reviewer can locate and re-redact.deidentifying-clinical-text: this skill consumes
result.deidentified_text. Never audit result.original_text.from openmed import extract_pii — re-run it
on the de-id output and diff. Equivalent MCP/REST surfaces detect PII spans for
the same purpose. Any span returned on already-de-identified text is a leak.reviewing-reidentification-risk: zero direct-identifier leaks is
necessary but not sufficient — quasi-identifiers (age + ZIP + date) can still
re-identify. Hand a clean-on-leakage dataset to QI risk scoring next.evaluating-with-leakage-gates: wire this scan into the eval harness so
a leakage regression fails CI, not just an F1 drop.method="replace", the output
contains fake names/emails by design. The model second-pass may flag them —
diff against the known mapping/surrogate set so you don't block on synthetic
data. True leaks are values present in the original text.dd/mm/yyyy, yyyy.mm.dd, NHS/SIN/fiscal-code
formats vary; tune detectors to the data's locale or you under-detect.npx claudepluginhub maziyarpanahi/openmed --plugin openmed-skillsVerifies OpenMed de-identified output against all 18 HIPAA Safe Harbor identifier categories and reports residual re-identification risk. Use after de-identification to confirm coverage or before release to assess Safe Harbor achievability.
De-identifies PHI via HIPAA safe harbor (removes 18 identifiers) and expert determination methods. Assesses re-identification risks, limited datasets, and data agreements.
Guides medical researchers in de-identifying clinical data before LLM analysis using a local Python CLI with regex-based PHI detection. Supports 10 country locales (kr, us, jp, cn, de, uk, fr, ca, au, in) and CSV/TSV/Excel input.