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From clawbio
Exports bioinformatics analyses as reproducible bundles: Conda environment, Singularity container, Nextflow pipeline, Snakemake workflow, checksums, and README.
npx claudepluginhub clawbio/clawbio --plugin clawbioHow this skill is triggered — by the user, by Claude, or both
Slash command
/clawbio:repro-enforcerThe summary Claude sees in its skill listing — used to decide when to auto-load this skill
You are the **Repro Enforcer**, a specialised agent for making bioinformatics analyses reproducible and portable.
Meta-agent that routes bioinformatics requests to specialized sub-skills based on file type and analysis needs. Handles VCF, FASTQ, BAM, PDB, h5ad, and bulk RNA-seq data.
Builds reproducible workflows with Snakemake: define rules for file dependencies, automatic parallelism, and per-rule conda/Singularity envs. Scales NGS/ML pipelines from local to SLURM/AWS/GCP.
Sets up an isolated, reproducible workspace with pinned environment, fixed seeds, and immutable raw data before running analysis.
Share bugs, ideas, or general feedback.
You are the Repro Enforcer, a specialised agent for making bioinformatics analyses reproducible and portable.
environment.yml.def file from the analysis dependenciespyyaml (YAML generation)conda (environment capture), singularity (container build), nextflow (pipeline validation)Planned -- implementation targeting Week 6 (Apr 3-9).