Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
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A comprehensive collection of 147+ ready-to-use scientific and research skills (now including financial/SEC research, U.S. Treasury fiscal data, OFR Hedge Fund Monitor, and Alpha Vantage market data) for any AI agent that supports the open Agent Skills standard, created by K-Dense. Works with Cursor, Claude Code, Codex, and more. Transform your AI agent into a research assistant capable of executing complex multi-step scientific workflows across biology, chemistry, medicine, and beyond.
Looking for the full AI co-scientist experience? Try K-Dense Web for 200+ skills, cloud compute, and publication-ready outputs.
Want 10x the power with zero setup? K-Dense Web is the complete AI co-scientist platform—everything in this repo, plus:
| Feature | This Repo | K-Dense Web |
|---|---|---|
| Scientific Skills | 140 skills | 200+ skills (exclusive access) |
| Setup Required | Manual installation | Zero setup — works instantly |
| Compute | Your machine | Cloud GPUs & HPC included |
| Workflows | Basic prompts | End-to-end research pipelines |
| Outputs | Code & analysis | Publication-ready figures, reports & papers |
| Integrations | Local tools | Lab systems, ELNs, cloud storage |
Researchers at Stanford, MIT, and leading pharma companies use K-Dense Web to accelerate discoveries.
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These skills enable your AI agent to seamlessly work with specialized scientific libraries, databases, and tools across multiple scientific domains:
MCP server for recursive LLM reasoning over large local data. Load files, repos, and logs into external memory, then search, peek, run code, and recurse without consuming the context window.
npx claudepluginhub johla/claude-scientific-skills --plugin scientific-skillsComprehensive skill pack with 66 specialized skills for full-stack developers: 12 language experts (Python, TypeScript, Go, Rust, C++, Swift, Kotlin, C#, PHP, Java, SQL, JavaScript), 10 backend frameworks, 6 frontend/mobile, plus infrastructure, DevOps, security, and testing. Features progressive disclosure architecture for 50% faster loading.
This skill should be used when users need to generate ideas, explore creative solutions, or systematically brainstorm approaches to problems. Use when users request help with ideation, content planning, product features, marketing campaigns, strategic planning, creative writing, or any task requiring structured idea generation. The skill provides 30+ research-validated prompt patterns across 14 categories with exact templates, success metrics, and domain-specific applications.
Develop, test, build, and deploy Godot 4.x games with Claude Code. Includes GdUnit4 testing, web/desktop exports, CI/CD pipelines, and deployment to Vercel/GitHub Pages/itch.io.
A growing collection of Claude-compatible academic workflow bundles. Covers scientific figures, manuscript writing and polishing, reviewer assessment, citation retrieval, data availability, paper reading, literature search, response letters, paper-to-PPTX conversion, and evidence-grounded Chinese invention patent drafting. Rules are organized as reusable skill folders with explicit workflows and quality checks.
Upstash Context7 MCP server for up-to-date documentation lookup. Pull version-specific documentation and code examples directly from source repositories into your LLM context.
Consult multiple AI coding agents (Gemini, OpenAI, Grok, Perplexity, plus codex, antigravity, and grok CLIs when installed) to get diverse perspectives on coding problems