nagomi

Nagomi PubMed Research

Forensic-grade PubMed research engine for Claude Code

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What it does

Five research tools accessible as slash commands in Claude Code:

Command	Description
/nagomi:search	Search PubMed with PICO-structured queries
/nagomi:synthesis	PhD-level evidence synthesis across studies
/nagomi:analyze	Critical appraisal of article trustworthiness
/nagomi:verify	Verify citations against PubMed records
/nagomi:export	Export references in APA, Vancouver, or BibTeX

Plus a research-assistant agent for comprehensive literature reviews combining all tools.

Install

claude plugin install avivlyweb/nagomi-pubmed-plugin

Or test locally:

claude --plugin-dir /path/to/nagomi-pubmed-plugin

Dependencies (Python 3.9+) are installed automatically on first use.

Usage

/nagomi:search CRISPR gene therapy sickle cell
/nagomi:synthesis long COVID cognitive outcomes
/nagomi:analyze 38547891
/nagomi:verify 10.1001/jama.2023.12345
/nagomi:export yoga neuroplasticity --format apa

How it works

The plugin bundles a Python MCP server that queries PubMed E-utilities (NCBI) directly. No API key required. The server provides:

• Enhanced search with study design classification and evidence leveling
• Trustworthiness analysis using Oxford CEBM hierarchy and risk-of-bias assessment
• Research synthesis with GRADE-style confidence ratings
• Reference verification via fuzzy matching against PubMed records
• Citation export in standard academic formats

License

MIT