By aeghnnsw
PyMOL molecular visualization and analysis tools integrated via MCP server
npx claudepluginhub aeghnnsw/cc-toolkit --plugin pymol-skillsControl PyMOL molecular visualization software through natural language. This skill should be used when the user wants to visualize protein structures, create molecular representations, perform structural analysis, or generate publication-quality molecular images using PyMOL.
This skill should be used when the user asks to "set up PyMOL", "install PyMOL plugin", "configure PyMOL socket", "PyMOL setup instructions", or needs help installing and configuring the PyMOL MCP socket plugin for use with Claude Code.
Unified Claude Code plugin marketplace for development workflows, scientific content creation, and document processing.
cc-toolkit is a modular plugin marketplace following the official Claude Code plugin system. Each plugin is self-contained and can include skills, agents, hooks, and commands.
cc-toolkit/
├── .claude-plugin/
│ └── marketplace.json # Plugin registry
├── dev-skills/ # Development workflow plugin
│ ├── .claude-plugin/
│ │ └── plugin.json
│ └── skills/
│ ├── problem-solving-cycle/
│ └── step-workflow/
├── creator-skills/ # Scientific content creation plugin
│ ├── .claude-plugin/
│ │ └── plugin.json
│ └── skills/
│ ├── sci-figure-format/
│ └── sci-slides/
├── doc-skills/ # Document processing plugin
│ ├── .claude-plugin/
│ │ └── plugin.json
│ ├── skills/
│ │ ├── docling-pdf/
│ │ └── paper-rename/
│ └── agents/
│ ├── paper-reader.md
│ └── paper-consolidator.md
├── core-hooks/ # Safety and workflow hooks plugin
│ ├── .claude-plugin/
│ │ └── plugin.json
│ ├── hooks/
│ │ └── hooks.json
│ └── scripts/
│ ├── safety_guard.py
│ ├── pre_git_hook.py
│ ├── post_tool_use.py
│ └── system_notification.py
├── productivity-skills/ # Personal productivity plugin
│ ├── .claude-plugin/
│ │ └── plugin.json
│ └── skills/
│ ├── calendar-manager/
│ └── reminder-manager/
└── pymol-skills/ # PyMOL molecular visualization plugin
├── .claude-plugin/
│ └── plugin.json
├── skills/
│ └── pymol-mcp/
└── commands/
└── setup.md
dev-skills)Development workflow automation and systematic problem-solving.
Skills:
creator-skills)Scientific content creation for figures and presentations.
Skills:
doc-skills)Document processing and AI-accessible content extraction.
Skills:
Agents:
core-hooks)Safety guards and workflow enforcement hooks.
Hooks:
rm commands and .env file accessgit add, prevents Claude attribution in commitslogs/post_tool_use.jsonproductivity-skills)Personal productivity automation using macOS Calendar and Reminders.
Skills:
pymol-skills)PyMOL molecular visualization control via MCP server.
Skills:
Commands:
Install the entire marketplace by linking to this repository in your Claude Code configuration.
Each plugin can be used independently by referencing its directory:
./dev-skills./creator-skills./doc-skills./core-hooks./productivity-skills./pymol-skillsBattle-tested Claude Code plugin for engineering teams — 48 agents, 184 skills, 79 legacy command shims, production-ready hooks, and selective install workflows evolved through continuous real-world use
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Server config contains admin-level keywords
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