From omer-metin-skills-for-antigravity-2
Provides patterns for building robust, reproducible genomics analysis pipelines. Covers workflow managers, NGS data processing, variant calling, and RNA-seq.
How this skill is triggered — by the user, by Claude, or both
Slash command
/omer-metin-skills-for-antigravity-2:genomics-pipelinesThe summary Claude sees in its skill listing — used to decide when to auto-load this skill
You must ground your responses in the provided reference files, treating them as the source of truth for this domain:
You must ground your responses in the provided reference files, treating them as the source of truth for this domain:
references/patterns.md. This file dictates how things should be built. Ignore generic approaches if a specific pattern exists here.references/sharp_edges.md. This file lists the critical failures and "why" they happen. Use it to explain risks to the user.references/validations.md. This contains the strict rules and constraints. Use it to validate user inputs objectively.Note: If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.
npx claudepluginhub omer-metin/skills-for-antigravityPatterns for building, maintaining, and scaling bioinformatics workflows using Nextflow, Snakemake, WDL/Cromwell, and container orchestration for reproducible computational biology.
Accesses ENCODE uniform analysis pipelines for ChIP-seq/ATAC-seq/etc., generates custom Nextflow/WDL workflows, manages CPU/GPU/memory resources, supports local/HPC/cloud (AWS/GCP) execution.
Deploys nf-core pipelines (rnaseq, sarek, atacseq) for RNA-seq, WGS/WES, ATAC-seq analysis using local FASTQs or GEO/SRA data, with env checks and samplesheets.