From mims-harvard-tooluniverse
Performs FDA drug regulatory research: substance identification via FDAGSRS, ATC/EPC/MoA classification via RxClass, Orange Book generic availability/patents/exclusivity, DailyMed label parsing, clinical trial search.
npx claudepluginhub joshuarweaver/cascade-data-analytics --plugin mims-harvard-tooluniverseThis skill uses the workspace's default tool permissions.
**Regulatory status depends on jurisdiction.** FDA approval does not equal EMA approval — check the specific market the user is asking about. Generic availability depends on BOTH patent expiry AND regulatory approval — a patent may have expired but no ANDA may yet be filed or approved. Exclusivity codes (NCE, ODE, PED) can block generics even after patent expiry; always check `FDA_OrangeBook_ge...
Conducts multi-round deep research on GitHub repos via API and web searches, generating markdown reports with executive summaries, timelines, metrics, and Mermaid diagrams.
Dynamically discovers and combines enabled skills into cohesive, unexpected delightful experiences like interactive HTML or themed artifacts. Activates on 'surprise me', inspiration, or boredom cues.
Generates images from structured JSON prompts via Python script execution. Supports reference images and aspect ratios for characters, scenes, products, visuals.
Regulatory status depends on jurisdiction. FDA approval does not equal EMA approval — check the specific market the user is asking about. Generic availability depends on BOTH patent expiry AND regulatory approval — a patent may have expired but no ANDA may yet be filed or approved. Exclusivity codes (NCE, ODE, PED) can block generics even after patent expiry; always check FDA_OrangeBook_get_exclusivity before concluding a generic can enter. A 505(b)(2) NDA is not a generic — it requires its own clinical data and gets its own exclusivity period.
LOOK UP DON'T GUESS: never assume NDA numbers, exclusivity dates, or ATC codes — always call FDAGSRS, Orange Book, and RxClass tools to retrieve current data; regulatory status changes with new approvals and expirations.
Regulatory intelligence for drugs: identify FDA substances, classify drugs by therapeutic category, check approval and generic status, retrieve label sections, and find clinical trials.
tooluniverse-drug-drug-interactiontooluniverse-pharmacogenomicstooluniverse-drug-mechanism-researchtooluniverse-drug-repurposingInput (drug name / brand name / UNII)
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Phase 1: Substance Identification -- FDAGSRS_search_substances, FDAGSRS_get_substance
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Phase 2: Drug Classification -- RxClass_get_drug_classes, RxClass_find_classes
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Phase 3: Approval & Generic Status -- FDA_OrangeBook_search_drug, FDA_OrangeBook_check_generic_availability
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Phase 4: Patent & Exclusivity -- FDA_OrangeBook_get_patent_info, FDA_OrangeBook_get_exclusivity
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Phase 5: Label Parsing -- DailyMed_parse_adverse_reactions, DailyMed_parse_dosing, etc.
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Phase 6: Clinical Trials -- search_clinical_trials
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Phase 7: Pharmacovigilance -- FAERS_count_reactions_by_drug_event (param: medicinalproduct)
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Phase 8: Literature & Approval -- PubMed_search_articles, OpenFDA_get_approval_history, RxNorm_get_drug_names
Supplementary tools (not in core phases but useful):
OpenFDA_get_approval_history— full FDA submission/approval history (requiresoperationparam)FAERS_count_reactions_by_drug_event— top adverse events by report count (param:medicinalproduct, ALL CAPS)RxNorm_get_drug_names— resolve drug to RXCUI and brand namesdrugbank_vocab_search— DrugBank ID, CAS, UNII lookupPubMed_search_articles— regulatory and clinical literature
FDAGSRS_search_substances: query (string REQUIRED -- drug name, UNII, InChIKey, or formula), substance_class (string, optional: "chemical"/"protein"/"nucleic acid"/"polymer"/"mixture"), limit (int, 1-50, default 10).
Returns {status, data: {substances: [{unii, name, substance_class, status, cross_references: [{type, value}]}]}}.
cross_references contains DrugBank IDs, WHO-ATC codes, CAS numbers, CFR citations.FDAGSRS_get_substance.FDAGSRS_get_substance: unii (string REQUIRED, 10-char FDA UNII code).
Returns complete substance record including all synonyms, names, structure, and cross-references.
FDAGSRS_get_structure: unii (string REQUIRED).
Returns {status, data: {smiles, formula, inchikey, molfile, molecular_weight, stereochemistry, optical_activity}}.
# Full substance lookup workflow
search = tu.tools.FDAGSRS_search_substances(query="semaglutide")
unii = search["data"]["substances"][0]["unii"]
full = tu.tools.FDAGSRS_get_substance(unii=unii)
RxClass_get_drug_classes: drug_name (string, drug name), rxcui (string, RxNorm RXCUI -- alternative to drug_name), rela_source (string, optional: "ATC"/"FDASPL"/"MESH"/"VA"), limit (int, default 20).
Returns {status, data: {classes: [{class_id, class_name, class_type, rela}]}}.
rela_source filters to one.class_type values: "ATC1-4", "EPC" (FDA Established Pharmacologic Class), "MoA", "VA", "MESH".RxClass_find_classes: query (string REQUIRED, keyword e.g., "beta blocker"), class_type (string, optional: "ATC1-4"/"EPC"/"MoA"), limit (int, default 20).
Returns matching drug classes with class IDs.
RxClass_get_class_members.RxClass_get_class_members: class_id (string REQUIRED, e.g., "M01AE"), rela_source (string, optional: "ATC"/"FDASPL"), ttys (string, optional: "IN" for ingredients), limit (int, default 50).
Returns all drug ingredients in the class with RXCUIs and names.
ttys="IN" restricts to active ingredient-level entries (recommended).# Find all proton pump inhibitors
classes = tu.tools.RxClass_find_classes(query="proton pump inhibitor", class_type="EPC")
class_id = classes["data"]["classes"][0]["class_id"]
members = tu.tools.RxClass_get_class_members(class_id=class_id, ttys="IN")
FDA_OrangeBook_search_drug: brand_name (string), generic_name (string), application_number (string), limit (int, default 10).
Returns {status, data: {products: [{brand_name, generic_name, dosage_form, strength, te_code, application_number, approval_date}]}}.
te_code: Therapeutic Equivalence code (e.g., "AB" = therapeutically equivalent).FDA_OrangeBook_check_generic_availability: brand_name (string), generic_name (string).
Returns {status, data: {reference_listed_drug, generics_available: bool, generics_count, generic_products: [...]}}.
FDA_OrangeBook_get_te_code: No special params beyond brand_name/application_number.
Returns therapeutic equivalence codes for substitutability assessment.
FDA_OrangeBook_get_approval_history: application_number (string, e.g., "NDA020402").
Returns chronological approval history including supplemental approvals and label changes.
# Check generic availability
result = tu.tools.FDA_OrangeBook_check_generic_availability(brand_name="LIPITOR")
# result["data"]["generics_available"] -> True
# result["data"]["generics_count"] -> N
FDA_OrangeBook_get_patent_info: application_number (string), brand_name (string).
Returns patent information. Note: Full patent numbers and expiration dates require Orange Book data files.
FDA_OrangeBook_get_exclusivity: application_number (string), brand_name (string).
Returns {status, data: {exclusivities: [{exclusivity_code, exclusivity_date, description}]}}.
exclusivity_code values: "NCE" (New Chemical Entity, 5 years), "ODE" (Orphan Drug, 7 years), "PED" (Pediatric, 6 months), "NP" (New Product), "M" (new formulation).All DailyMed parse tools accept either setid (SPL Set ID UUID) OR drug_name (auto-lookup).
Using drug_name is recommended when the setid is unknown.
DailyMed_parse_adverse_reactions: setid or drug_name. Returns structured adverse reaction table with frequencies and severity.
DailyMed_parse_dosing: setid or drug_name. Returns dosage and administration section (doses, schedules, renal/hepatic adjustments).
DailyMed_parse_contraindications: setid or drug_name. Returns contraindications section.
DailyMed_parse_drug_interactions: setid or drug_name. Returns drug-drug interaction section with clinical management guidance.
DailyMed_parse_clinical_pharmacology: setid or drug_name. Returns PK/PD data (Cmax, AUC, half-life, protein binding, metabolism pathway).
DailyMed_search_spls: drug_name (string), returns SPL Set IDs for that drug. Use to find setid when needed explicitly.
# Parse adverse reactions for apixaban
ae = tu.tools.DailyMed_parse_adverse_reactions(drug_name="apixaban")
search_clinical_trials: condition (string), intervention (string), query_term (string), pageSize (int, alias: max_results/limit), overall_status (array, alias: status).
Returns {status, data: {studies: [{NCT ID, brief_title, brief_summary, overall_status, phase}], total_count}}.
intervention for drug name, condition for disease.overall_status=["RECRUITING"] for active enrollment.total_count may be None even when results exist; check len(studies) > 0.# Find recruiting trials for a biosimilar
trials = tu.tools.search_clinical_trials(
intervention="adalimumab biosimilar",
overall_status=["RECRUITING"],
pageSize=10
)
1. FDAGSRS_search_substances(query="apixaban")
-> UNII, substance class, ATC/DrugBank cross-refs
2. RxClass_get_drug_classes(drug_name="apixaban", rela_source="ATC")
-> ATC code B01AF02 (direct factor Xa inhibitor)
3. FDA_OrangeBook_search_drug(brand_name="ELIQUIS")
-> NDA206518, approval date, TE code
4. FDA_OrangeBook_check_generic_availability(brand_name="ELIQUIS")
-> Generic availability status
5. FDA_OrangeBook_get_exclusivity(brand_name="ELIQUIS")
-> Exclusivity codes and expiration dates
6. DailyMed_parse_adverse_reactions(drug_name="apixaban")
-> Bleeding rates and other AEs from label
1. RxClass_find_classes(query="ACE inhibitor", class_type="EPC")
-> class_id for "Angiotensin-Converting Enzyme Inhibitor"
2. RxClass_get_class_members(class_id=<id>, ttys="IN")
-> All ACE inhibitors (enalapril, lisinopril, ramipril, etc.)
3. For each drug: RxClass_get_drug_classes(drug_name=drug)
-> Confirm ATC code and additional classifications
1. DailyMed_parse_adverse_reactions(drug_name="metformin")
-> AE frequencies (GI: lactic acidosis, nausea, diarrhea)
2. DailyMed_parse_contraindications(drug_name="metformin")
-> eGFR thresholds, renal impairment contraindications
3. DailyMed_parse_drug_interactions(drug_name="metformin")
-> Iodinated contrast, carbonic anhydrase inhibitor interactions
4. DailyMed_parse_clinical_pharmacology(drug_name="metformin")
-> Half-life, renal clearance, bioavailability
brand_name must be UPPERCASE (e.g., "LIPITOR")FDAGSRS_get_substance requires UNII, not drug name — call FDAGSRS_search_substances firstFDAGSRS_get_structure only works for chemical substances, not biologicsRxClass_get_class_members: pass ttys="IN" to restrict to active ingredientssearch_clinical_trials overall_status must be an array: ["RECRUITING"]Approval pathways: A 505(b)(1) NDA is a full new drug application with complete safety/efficacy data from the sponsor. A 505(b)(2) NDA relies partly on published literature or FDA findings for an already-approved drug (common for reformulations, new routes). An ANDA (Abbreviated NDA) is the generic pathway requiring only bioequivalence to the reference listed drug.
Orange Book patent and exclusivity: NCE (New Chemical Entity) exclusivity gives 5 years of data protection. ODE (Orphan Drug Exclusivity) gives 7 years. PED (Pediatric) adds 6 months to existing patents/exclusivity. A TE code of "AB" means the generic is therapeutically equivalent and substitutable. No TE code or "BX" means substitutability is not established.
DailyMed label sections: The "Adverse Reactions" section distinguishes clinical trial rates (controlled) from post-marketing reports (uncontrolled, signal-only). "Contraindications" are absolute; "Warnings and Precautions" are conditional risks. "Clinical Pharmacology" provides PK parameters (Cmax, AUC, half-life) essential for drug interaction and dosing assessment.
A complete drug regulatory report should answer: