By mims-harvard
Access 1000+ scientific tools and 120+ research skills for life sciences data analysis — drug discovery, genomics, variant interpretation, clinical research, and multi-omics integration.
Aging biology, cellular senescence, and longevity research. Covers senescence markers (p16/CDKN2A, SASP, SA-beta-gal), aging hallmarks, senolytic drug discovery (dasatinib+quercetin, fisetin, navitoclax), epigenetic clocks, telomere biology, and longevity GWAS. Use for senescence-pathway analysis, age-related disease genetics, senolytic-target discovery, and centenarian-genetics queries. Distinguishes correlative vs causal evidence (knockout, intervention).
Create high-quality ToolUniverse skills following test-driven, implementation-agnostic methodology.
Automatically discover life science APIs online, create ToolUniverse tools, validate them, and prepare integration PRs. Performs gap analysis to identify missing tool categories, web searches for APIs, automated tool creation using devtu-create-tool patterns, validation with devtu-fix-tool, and git workflow management. Use when expanding ToolUniverse coverage, adding new API integrations, or systematically discovering scientific resources.
Continuous improvement system for ToolUniverse tools, skills, and plugin. Run benchmarks, diagnose failures, route fixes to devtu skills, retest. Use after skill optimization, tool additions, or as regression check.
Code quality patterns and guidelines for ToolUniverse tool development. Apply when writing, fixing, or refactoring tool Python code in the ToolUniverse project. Encodes lessons from 80+ debug rounds. Use alongside devtu-fix-tool and devtu-self-evolve. Triggers: implementing tool fixes, writing new tool classes, reviewing tool code quality, checking schema correctness, looking up API-specific bug fixes.
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AI agent (recommended) — open your AI agent and run:
Read https://aiscientist.tools/setup.md and set up ToolUniverse for me.
The agent will walk you through MCP configuration, API keys, skill installation, and validation.
Add to your MCP config file:
{
"mcpServers": {
"tooluniverse": {
"command": "uvx",
"args": ["--refresh", "tooluniverse"],
"env": {"PYTHONIOENCODING": "utf-8"}
}
}
}
Install agent skills:
npx skills add mims-harvard/ToolUniverse
Python developers — install the SDK:
uv pip install tooluniverse
tu CLI — discover, inspect, run, and test tools from the terminal.
Python SDK — programmatic access for building AI scientist systems.
Click to watch the demo (YouTube) (Bilibili)
ToolUniverse is an ecosystem for creating AI scientist systems from any large language model. Powered by the AI-Tool Interaction Protocol, it standardizes how LLMs identify and call tools, integrating more than 1000 machine learning models, datasets, APIs, and scientific packages for data analysis, knowledge retrieval, and experimental design.
Key features:
npx claudepluginhub mims-harvard/tooluniverse1000+ scientific tools (PubMed, UniProt, PubChem, TCGA, FAERS, ClinicalTrials.gov, etc.) + 115 research skills + MCP server + research slash commands.
Ready-to-use agent skills for research, science, engineering, analysis, finance, and technical writing across domains.
1000+ scientific tools (PubMed, UniProt, PubChem, TCGA, FAERS, ClinicalTrials.gov, etc.) + 115 research skills + MCP server + research slash commands.
Life sciences computational skills for scientific AI agents — 197 skills covering genomics, proteomics, drug discovery, biostatistics, scientific computing, and scientific writing
Access ClinicalTrials.gov data. The Clinical Trials Connector gives Claude access to ClinicalTrials.gov, the NIH/NLM registry of FDA-regulated clinical studies conducted worldwide.
Three AI models, one synthesis — multi-model research workflow for scientific domains
Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D