catalog

Catalog Manipulation

Agent-friendly operations for the document catalog and link graph. Use these instead of raw MCP calls when you need to find, link, or understand documents.

Resolve: Find a Document

Given a file path, title, or RDR name, find its catalog tumbler.

# By file path (relative — post-RDR-060)
mcp__plugin_conexus_nexus-catalog__search(query="src/nexus/scoring.py")
# → Extract tumbler from first result

# By title or RDR name
mcp__plugin_conexus_nexus-catalog__search(query="RDR-060")
# → Extract tumbler from first result

# By content type
mcp__plugin_conexus_nexus-catalog__search(query="catalog", content_type="code")

The result includes tumbler, title, content_type, file_path. Use the tumbler for all subsequent operations.

Quick resolve pattern (copy-paste):

result = mcp__plugin_conexus_nexus-catalog__search(query="<file-or-title>", limit=1)
# Parse tumbler from result

Context: What's Linked to This File?

Before modifying a file, understand its design context:

# CLI (fast, human-readable)
nx catalog links-for-file src/nexus/scoring.py

# MCP (for agents)
mcp__plugin_conexus_nexus-catalog__search(query="src/nexus/scoring.py", limit=1)
# → get tumbler
mcp__plugin_conexus_nexus-catalog__links(tumbler="<tumbler>", direction="both")
# → {"nodes": [...], "edges": [...]}

This shows which RDRs discuss the file, what other code it's linked to, and through what link types.

To retrieve linked RDR content (not just the graph structure), use query with link traversal:

mcp__plugin_conexus_nexus__query(question="<topic>", follow_links="implements", subtree="<owner>")

This returns document content from linked RDRs ranked by relevance — typically more useful than raw graph metadata.

Link: Connect Two Documents

Create a typed link between documents. Accepts tumblers or titles.

# By tumbler
mcp__plugin_conexus_nexus-catalog__link(
    from_tumbler="1.1.115",
    to_tumbler="1.1.440",
    link_type="implements",
    created_by="<your-agent-name>"
)

# By title (resolve first)
# 1. Search for source: mcp__plugin_conexus_nexus-catalog__search(query="scoring.py") → tumbler "1.1.115"
# 2. Search for target: mcp__plugin_conexus_nexus-catalog__search(query="RDR-060") → tumbler "1.1.440"
# 3. Link: mcp__plugin_conexus_nexus-catalog__link(from_tumbler="1.1.115", to_tumbler="1.1.440", ...)

Link types (use the right one):

Type	Meaning	When to use
implements	Code implements design	Code file ← RDR that specifies it
cites	Document references another	Paper citing another paper or RDR
relates	General relationship	Two related docs without directional meaning
supersedes	Replaces an older version	New RDR superseding old one
formalizes	Higher abstraction → raw source	Extracted entities / triples pointing back to an L0 text chunk (RDR-057)

Do NOT use implements-heuristic — that's for the automated linker only.

Seed: Set Up Auto-Linker Context

Before storing findings via store_put, seed T1 scratch so the auto-linker creates links automatically:

# 1. Resolve the target document
mcp__plugin_conexus_nexus-catalog__search(query="RDR-060", limit=1)
# → tumbler "1.1.440"

# 2. Seed link-context in T1 scratch
mcp__plugin_conexus_nexus__scratch(
    action="put",
    content='{"targets": [{"tumbler": "1.1.440", "link_type": "relates"}], "source_agent": "<agent-name>"}',
    tags="link-context"
)

# 3. Now store_put — auto-linker fires automatically
mcp__plugin_conexus_nexus__store_put(content="...", collection="knowledge", title="...")
# → auto-linker reads link-context and creates: new_doc → 1.1.440 (relates)

Multiple targets: add more items to the targets array:

{"targets": [
    {"tumbler": "1.1.440", "link_type": "implements"},
    {"tumbler": "1.1.383", "link_type": "cites"}
], "source_agent": "my-agent"}

Skip seeding when: no relevant RDR/document exists for what you're storing. The auto-linker handles empty context gracefully (zero links created, no error).

Discovery: Find What Needs Linking

nx catalog orphans --no-links     # entries with zero links
nx catalog coverage               # % linked by content type
nx catalog suggest-links           # unlinked code-RDR pairs
nx catalog session-summary         # recently modified files + linked RDRs

When to Create Links

• Implementing an RDR: link code files → RDR with implements
• Storing research findings: seed link-context before store_put with cites or relates
• Architectural decisions: link decision doc → related RDRs with relates
• Consolidating knowledge: link new → old with supersedes

Links are permanent and idempotent — creating the same link twice is a no-op.