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From clinicaltrialsgov-mcp-server
DataCanvas primitive reference — a Tier 3 SQL/analytical workspace for tabular MCP servers, backed by DuckDB. Use when registering tables from upstream APIs, running ad-hoc SQL across them, and exporting results. Covers the acquire → register → query → export flow, the token-sharing pattern for multi-agent collaboration, env config, and Cloudflare Workers fail-closed behavior.
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`DataCanvas` is a primitive for **storage stashes, canvas computes**. The existing `IStorageProvider` is a key/value abstraction — it can stash blobs but exposes no analytical surface. `DataCanvas` is the analytical surface: register tabular data from upstream APIs, run SQL across multiple registered tables, and export results as CSV/Parquet/JSON.
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DataCanvas is a primitive for storage stashes, canvas computes. The existing IStorageProvider is a key/value abstraction — it can stash blobs but exposes no analytical surface. DataCanvas is the analytical surface: register tabular data from upstream APIs, run SQL across multiple registered tables, and export results as CSV/Parquet/JSON.
Tier 3 — @duckdb/node-api is an optional peer dependency (bun add @duckdb/node-api). Servers that don't enable canvas pay zero install cost. Lazy-loaded on first use.
Disabled by default. Set CANVAS_PROVIDER_TYPE=duckdb to enable. Otherwise core.canvas is undefined.
Cloudflare Workers: unsupported. DuckDB has no V8-isolate build. Setting CANVAS_PROVIDER_TYPE=duckdb on a Worker fails closed with a ConfigurationError at init time.
Two gates before wiring canvas in — both must be yes. Canvas that fails either is a SQL surface nobody queries.
SELECT … GROUP BY against this?", not "does it have many rows?" For name→ID resolution over a bounded list, reach for MCP-side list filtering (see the design-mcp-server skill) instead.If canvas earns its keep, it carries an obligation: a tool that emits a canvas_id MUST ship a dataframe_query tool in the same server's surface (see the simple-shape Tools row and the Checklist). A canvas_id with no query tool is dead output — the agent literally cannot reach the staged data.
import type { DataCanvas, CanvasInstance, ColumnSchema } from '@cyanheads/mcp-ts-core/canvas';
The framework wires the optional service onto CoreServices, accessible in the setup() callback — not on Context. Handlers access canvas via a module-level accessor:
// src/services/canvas-accessor.ts
import type { DataCanvas } from '@cyanheads/mcp-ts-core/canvas';
let _canvas: DataCanvas | undefined;
export const setCanvas = (c: DataCanvas | undefined) => { _canvas = c; };
export const getCanvas = () => _canvas;
// src/index.ts — wire in setup()
import { setCanvas } from './services/canvas-accessor.js';
await createApp({
setup(core) {
setCanvas(core.canvas);
},
});
interface CoreServices {
canvas?: DataCanvas; // present when CANVAS_PROVIDER_TYPE !== 'none'
// ... other services
}
A canvas is identified by an opaque 10-character URL-safe canvasId (~10¹⁸ keyspace). Tools that touch canvas state accept an optional canvas_id input parameter:
| Caller passes | Result |
|---|---|
| Omitted | Framework mints a fresh canvasId, returns it in the tool output. Caller surfaces it to the user / next tool call / another agent. |
| Existing id (own tenant) | Resolves to that canvas, slides TTL forward, returns isNew: false. |
| Existing id (other tenant) | Throws NotFound — uniform with unknown to avoid leaking existence across tenants. |
| Unknown id | Throws NotFound with a hint to omit the parameter on retry. |
When auth is enabled, the effective scope is the composite (tenantId, canvasId). In MCP_AUTH_MODE=none, tenantId collapses to 'default' and the canvasId is the only differentiator — entropy + TTL + the framework's rate limiter make brute-force discovery operationally infeasible. Designed for public-data servers (BrAPI, OpenFEC, etc.). Don't put PII on a no-auth canvas.
| Behavior | Default | Override |
|---|---|---|
| Sliding TTL | 24 h, extended on every operation | CANVAS_TTL_MS |
| Absolute cap from creation | 7 days | CANVAS_ABSOLUTE_CAP_MS |
| Per-tenant active cap | 100 canvases | CANVAS_MAX_CANVASES_PER_TENANT |
| Sweeper interval | 60 s | CANVAS_SWEEPER_INTERVAL_MS (0 to disable) |
| Persistence | In-memory only | — (v1; restart drops all canvases) |
The sweeper runs as an unref'd setInterval — does not keep the event loop alive on its own. Shutdown via core.canvas.shutdown(ctx) (called automatically from ServerHandle.shutdown()) stops the sweeper and tears down every active DuckDB instance.
canvas.acquire(maybeId, ctx, options?) → CanvasInstanceResolves an existing canvas or creates a new one. Returns a {@link CanvasInstance} bound to (canvasId, tenantId). Subsequent operations don't repeat them.
import { getCanvas } from '@/services/canvas-accessor.js';
const canvas = getCanvas();
if (!canvas) throw new Error('DataCanvas is not enabled. Set CANVAS_PROVIDER_TYPE=duckdb.');
const instance = await canvas.acquire(input.canvas_id, ctx);
// instance.canvasId — surface to the agent
// instance.isNew — true on first call
// instance.expiresAt — ISO 8601 after sliding extension
instance.registerTable(name, rows, options?)Register an in-memory or async-iterable rowset as a canvas table.
await instance.registerTable('germplasm', rows);
// Explicit schema for AsyncIterable (required — sniffer can't peek).
await instance.registerTable('big_dataset', asyncRows, {
schema: [
{ name: 'id', type: 'BIGINT' },
{ name: 'label', type: 'VARCHAR', nullable: true },
],
});
Schema inference when schema is omitted: sniffer materializes the first 100 rows, unions JS-side types per column, and maps to DuckDB types. Fall-backs to VARCHAR for ambiguous unions (string mixed with numerics). Numeric widening: INTEGER + DOUBLE → DOUBLE, INTEGER + BIGINT → BIGINT. Column ordering follows first-appearance.
instance.query(sql, options?)Run SQL across registered tables. Returns at most rowLimit rows (default 10 000). For full result sets, pass registerAs — the result is materialized as a new canvas table; the response carries a preview slice plus the table reference.
const result = await instance.query(`
SELECT germplasmName, COUNT(*) AS n
FROM germplasm GROUP BY germplasmName ORDER BY n DESC
`);
// Materialize a join result for follow-up queries.
const joined = await instance.query(`
SELECT g.germplasmName, o.value
FROM germplasm g JOIN observations o ON g.germplasmDbId = o.germplasmDbId
`, { registerAs: 'g_with_obs', preview: 10 });
// joined.tableName === 'g_with_obs'; joined.rows.length === 10; joined.rowCount === <full count>
registerAs rejects with ValidationError (data.reason: 'register_as_clash') if the target name already exists — drop it first.
Read-only enforcement (four layers):
read_csv*, read_json*, read_parquet*, read_text, read_blob, glob, iceberg_scan, delta_scan, postgres_scan, mysql_scan, sqlite_scan, plus pre-staged spatial ones).extractStatements.SELECT) via prepared.statementType.Any layer's rejection throws ValidationError with a structured data.reason. File-reading scans (READ_CSV, READ_PARQUET, READ_JSON), DDL (CREATE_*, DROP_*, ALTER_*), DML (INSERT, UPDATE, DELETE), exports (COPY_TO_FILE), and utility statements (PRAGMA, ATTACH, LOAD, SET) are all rejected.
instance.registerView(name, selectSql, options?)Register a SQL view on the canvas. The SELECT runs through the same four-layer gate query() enforces, so a malicious definition fails at registration time, not later when the view is referenced.
await instance.registerView(
'sales_by_region',
'SELECT region, SUM(amount) AS total FROM sales GROUP BY region',
);
// { viewName: 'sales_by_region', columns: ['region', 'total'] }
// Subsequent queries against the view inherit normal gate enforcement at execution time.
const result = await instance.query("SELECT total FROM sales_by_region WHERE region = 'a'");
CREATE OR REPLACE VIEW semantics: re-registering the same name succeeds. Conflict with an existing base table throws validationError({ reason: 'view_table_clash' }).
instance.importFrom(sourceCanvasId, sourceTableName, options?)Copy a table from another canvas the caller controls into this one. The lifecycle wrapper validates tenancy on both ids before the provider sees either. Round-trips through a sandbox-rooted Parquet temp file so TIMESTAMP/DATE/BLOB columns survive losslessly.
const imported = await target.importFrom(source.canvasId, 'orders', { asName: 'orders_copy' });
// { tableName: 'orders_copy', rowCount: 2, columns: [...] }
Idempotent on re-import (drop + create on the target). asName defaults to sourceTableName. Throws validationError({ reason: 'import_same_canvas' }) if source and target are the same canvas — use query({ registerAs }) to materialize within a single canvas. Throws notFound if the source table is missing; validationError({ reason: 'import_view_clash' }) if the target name collides with an existing view.
instance.export(tableName, target, options?)Export a canvas table. Path-based exports are sandboxed to CANVAS_EXPORT_PATH (default ./.canvas-exports). Absolute paths and .. traversal are rejected.
// Path target — written inside the sandbox.
await instance.export('g_with_obs', { format: 'parquet', path: 'observations.parquet' });
// Stream target — copied to a temp file in the sandbox, piped to the stream, unlinked.
await instance.export('g_with_obs', { format: 'csv', stream: writableStream });
instance.describe(options?) / instance.drop(name) / instance.clear()const tables = await instance.describe();
// [{ name: 'germplasm', kind: 'table', rowCount: 200, columns: [...] }, ...]
// Filter by kind ('table' | 'view').
const onlyViews = await instance.describe({ kind: 'view' });
await instance.drop('staging_table'); // detects kind, emits DROP TABLE or DROP VIEW; false if missing
await instance.clear(); // returns count dropped (drops views before tables to avoid dependency errors)
TableInfo.kind discriminates 'table' vs 'view'. For views, rowCount is materialized at describe time via COUNT(*) — not free; treat as an approximation if the view is expensive.
registerTable, query, and export accept options.signal: AbortSignal. The provider opens a fresh DuckDB connection per query/export so connection.interrupt() cancels exactly the in-flight work without disturbing other ops on the same canvas.
Rows are returned via DuckDB's getRowObjectsJson() for JSON-safe serialization:
| DuckDB type | JS type returned |
|---|---|
VARCHAR, JSON | string |
INTEGER, DOUBLE | number |
BIGINT | string (lossless for values outside JS Number range) |
BOOLEAN | boolean |
DATE, TIMESTAMP | string |
BLOB | string (base64) |
NULL | null |
If your tool surfaces row data via structuredContent, the JSON-safe shape flows through unchanged.
| Env Var | AppConfig field | Default |
|---|---|---|
CANVAS_PROVIDER_TYPE | canvas.providerType | none (also: duckdb) |
CANVAS_DEFAULT_MEMORY_LIMIT_MB | canvas.defaultMemoryLimitMb | 1024 |
CANVAS_EXPORT_PATH | canvas.exportRootPath | ./.canvas-exports |
CANVAS_MAX_CANVASES_PER_TENANT | canvas.maxCanvasesPerTenant | 100 |
CANVAS_TTL_MS | canvas.ttlMs | 86_400_000 (24 h) |
CANVAS_ABSOLUTE_CAP_MS | canvas.absoluteCapMs | 604_800_000 (7 d) |
CANVAS_SWEEPER_INTERVAL_MS | canvas.sweeperIntervalMs | 60_000 |
CANVAS_DEFAULT_ROW_LIMIT | canvas.defaultRowLimit | 10_000 |
CANVAS_SCHEMA_SNIFF_ROWS | canvas.schemaSniffRows | 100 |
Most canvas use cases are public-data analytics: fetch from an upstream API, stage the full result, let the agent SQL it. The primitives are domain-neutral — canvas.acquire(), spillover(), instance.query() — so the minimum viable shape is small and generic. Reach for it first; add scoping only when a real multi-tenant requirement appears.
| Concern | Simple-shape answer |
|---|---|
| Canvas scoping | One shared canvas per tenant. Omit canvas_id on the first call to mint one; pass the returned id back to reuse it. |
| Table naming | spillover() auto-names the table spilled_<id>; pass tableName for a stable handle. A dataframe-query surface commonly adds its own df_<id> convention. |
| Access control | Possession of the canvas_id is access — unguessable in practice (see token-sharing model). TTL + the framework rate limiter backstop brute force. |
| Enable flag | None of your own — canvas presence is the gate (CANVAS_PROVIDER_TYPE=duckdb; getCanvas() returns undefined otherwise). |
| Tools | A fetcher that spills plus a dataframe_query tool — mandatory once anything emits a canvas_id: a token with no query tool in the same server is dead output (the agent can't reach the staged data). dataframe_describe is strongly recommended — it lets the agent discover staged table and column names before writing SQL. dataframe_drop is optional. None are framework-provided; you register them. |
| Fetcher output | Two things in one response: the inline preview (answer to the immediate question) and the table handle (escape hatch for follow-up SQL via dataframe_query). Neither replaces the other. |
The
MCP_HTTP_MAX_BODY_BYTESrequest-body cap is inbound-only — it bounds the JSON-RPC request, not the upstream data a handler stages into the canvas or the rows it returns. Canvas servers send small requests (queries, SQL, canvas IDs) regardless of dataset size, so the cap never constrains canvas ingestion.
A fetcher that spills and a query tool that runs SQL across what was spilled — the whole surface. Swap fetchUpstream for any paginated or streamed source; nothing here is domain-specific.
import { tool, z } from '@cyanheads/mcp-ts-core';
import { spillover } from '@cyanheads/mcp-ts-core/canvas';
import { getCanvas } from '@/services/canvas-accessor.js';
/** Fetch an upstream dataset, inline a preview, spill the full result to a canvas table. */
export const fetchDataset = tool('fetch_dataset', {
description:
'Fetch a dataset and stage it on a DataCanvas. Returns an inline preview plus a ' +
'canvas_id + table you can query with dataframe_query for the full result set.',
annotations: { readOnlyHint: true },
input: z.object({
query: z.string().describe('Upstream search/filter expression'),
canvas_id: z
.string()
.optional()
.describe('Canvas ID from a prior call. Omit to start fresh — the response returns a new one.'),
}),
output: z.object({
canvas_id: z.string().describe('Canvas ID — pass to dataframe_query or another fetch call'),
table_name: z.string().describe('Canvas table holding the full result (empty when not spilled)'),
spilled: z.boolean().describe('True when the result exceeded the preview and was staged'),
preview: z.array(z.record(z.string(), z.unknown())).describe('Inline rows — the immediate answer'),
row_count: z.number().describe('Rows staged on the canvas (preview length when not spilled)'),
}),
async handler(input, ctx) {
const canvas = getCanvas();
if (!canvas) throw new Error('DataCanvas is not enabled. Set CANVAS_PROVIDER_TYPE=duckdb.');
const instance = await canvas.acquire(input.canvas_id, ctx);
const result = await spillover({
canvas: instance,
source: fetchUpstream(input.query), // any AsyncIterable<Row> | Iterable<Row>
previewChars: 100_000, // ≈ 25k tokens inline
signal: ctx.signal,
});
return {
canvas_id: instance.canvasId,
table_name: result.spilled ? result.handle.tableName : '',
spilled: result.spilled,
preview: result.previewRows,
row_count: result.spilled ? result.handle.rowCount : result.previewRows.length,
};
},
});
/** Run read-only SQL across tables staged on a canvas. */
export const dataframeQuery = tool('dataframe_query', {
description: 'Run a read-only SQL SELECT against tables staged on a canvas by fetch_dataset.',
annotations: { readOnlyHint: true },
input: z.object({
canvas_id: z.string().describe('Canvas ID returned by fetch_dataset'),
sql: z.string().describe('Read-only SELECT. Reference tables by the names fetch_dataset returned.'),
}),
output: z.object({
rows: z.array(z.record(z.string(), z.unknown())).describe('Result rows (capped at the canvas row limit)'),
row_count: z.number().describe('Full result count before the row cap'),
}),
async handler(input, ctx) {
const canvas = getCanvas();
if (!canvas) throw new Error('DataCanvas is not enabled. Set CANVAS_PROVIDER_TYPE=duckdb.');
const instance = await canvas.acquire(input.canvas_id, ctx);
const result = await instance.query(input.sql, { signal: ctx.signal });
return { rows: result.rows, row_count: result.rowCount };
},
});
| Condition | Simple shape suffices? |
|---|---|
| Underlying data is publicly accessible | ✅ |
| Single-user deployment (stdio, or HTTP with one user) | ✅ — no cross-user surface regardless of data sensitivity |
| Use case is research / analytics, not multi-tenant SaaS | ✅ |
| Dataframes must age individually | ⚠️ TTL is canvas-level today (a hot canvas keeps stale tables alive); per-table TTL is tracked in #140. Backstop with ctx.state bookkeeping in the interim. |
| Per-user row visibility matters in a multi-user deployment | ❌ — add session/tenant scoping at the server level |
The germplasm-flavored consumer tool template below is the same pattern with domain-specific naming.
A domain-specific instance of the minimum viable spillover server above — the same acquire → register → return handle flow with germplasm naming.
import { tool, z } from '@cyanheads/mcp-ts-core';
import { getCanvas } from '@/services/canvas-accessor.js';
export const fetchAndStage = tool('fetch_and_stage_germplasm', {
description: 'Fetch germplasm matching a query and stage it on a DataCanvas for follow-up SQL.',
input: z.object({
query: z.string().describe('Search query'),
canvas_id: z
.string()
.optional()
.describe(
'Optional 10-char canvas ID returned from a prior call. Omit on first call to start a fresh canvas; the response will include a new canvas_id you can pass to subsequent calls or share with another agent.',
),
}),
output: z.object({
canvas_id: z.string().describe('Canvas ID — pass to subsequent tool calls'),
is_new_canvas: z.boolean().describe('True if a new canvas was created'),
table_name: z.string().describe('Canvas table where rows were registered'),
row_count: z.number().describe('Rows registered'),
expires_at: z.string().describe('ISO 8601 expiry after sliding 24h window'),
}),
async handler(input, ctx) {
const canvas = getCanvas();
if (!canvas) {
throw new Error('DataCanvas is not enabled. Set CANVAS_PROVIDER_TYPE=duckdb.');
}
const instance = await canvas.acquire(input.canvas_id, ctx);
const rows = await fetchGermplasm(input.query);
const tableInfo = await instance.registerTable('germplasm', rows);
return {
canvas_id: instance.canvasId,
is_new_canvas: instance.isNew,
table_name: tableInfo.tableName,
row_count: tableInfo.rowCount,
expires_at: instance.expiresAt,
};
},
});
A handler produces a tabular result that's too big to inline: a paginated REST call that returns 50k rows, a streamed CSV, a database cursor. Inlining everything blows the agent's context; inlining a fixed slice leaves it blind to the rest. Spillover is the third option — show a small preview, register the whole result on the canvas, hand back a token pointing at it. The agent reads the preview directly and reaches for SQL when it needs the rest.
spillover(opts)import { spillover } from '@cyanheads/mcp-ts-core/canvas';
const result = await spillover({
canvas: instance,
source: fetchAllPages(), // any AsyncIterable<Row> or Iterable<Row>
previewChars: 100_000, // ≈ 25k tokens of inline rows
caps: { maxRows: 50_000 }, // hard upper bound on registered rows
signal: ctx.signal,
});
if (result.spilled) {
// result.previewRows → inline these in the response
// result.handle.tableName → surface so the agent can SQL the full set
// result.truncated → true if caps.maxRows was hit before the source exhausted
} else {
// result.previewRows → entire source fit; no canvas table was created
}
The discriminated union narrows on result.spilled — no runtime checks needed.
The budget is characters of JSON.stringify(row), not rows. A row count is a leaky proxy: the same 50 rows is ~500 tokens for compact IDs and ~25k tokens for nested observations. A character budget gives one number that works across heterogeneous tools.
| Token budget you want | Rough previewChars |
|---|---|
| 10k tokens | 40_000 |
| 25k tokens | 100_000 |
| 50k tokens | 200_000 |
Heuristic: ~4 chars per token for typical JSON. Refine empirically per tool if the row shape is unusual.
JSON.stringify(row).length per row, until the running total would exceed previewChars (the row that crosses the budget is the overflow sentinel) or the source exhausts.{ spilled: false, previewRows }. No canvas call was made.canvas.registerTable, return { spilled: true, previewRows, handle, truncated }.The merged iterable streams — the helper does not double-buffer the full source.
| Source | Schema | Behavior |
|---|---|---|
| Sync or async | Caller-supplied | Forwarded to registerTable as-is |
| Sync or async | Omitted | Helper infers via inferSchemaFromRows over preview buffer + sentinel |
When the preview budget is small (single-digit rows) and the sniff window matters, pass schema explicitly — the helper's window is only as large as the preview budget allows.
signal.abort() throws on the next iteration of the preview drain or the spill drain. If abort fires after canvas.registerTable has begun appending rows, the helper best-effort calls canvas.drop(tableName) before the throw propagates — the contract is "partial drain is not registered."
canvas.registerTable directly. previewChars is rejected at 0; spillover always implies a visible preview.ctx.state instead.ctx.state or tool output — canvas tables carry data only, not lineage.paginate(fetchPage) → AsyncIterable<Row> adapter is deferred until a second non-paginated consumer surfaces.previewTokens (tokenizer-driven) is a future option; characters cover the common case.caps.maxBytes. Row caps cover the common case without re-doing serialization the canvas appender skips.ctx.log if needed.| Platform | Status |
|---|---|
| Linux x64 / arm64 | Supported |
| macOS x64 / arm64 | Supported |
| Windows x64 | Supported |
| Windows arm64 | Not supported (DuckDB upstream limitation) |
| Cloudflare Workers | Not supported — fail-closed at init time |
@duckdb/node-api installed as a peer dependency (bun add @duckdb/node-api)CANVAS_PROVIDER_TYPE=duckdb set in .envsrc/services/canvas-accessor.ts or equivalent)setup() callback via setCanvas(core.canvas)if (!canvas) throw ...)canvas_id accepted as optional input, returned in outputdataframe_query tool is registered in this server whenever any tool emits a canvas_id — a token with no query tool is dead output. Register dataframe_describe too (lets the agent discover staged table/column names)getCanvas() accessor with vi.spyOn or a test setup that calls setCanvas(mockCanvas)bun run devcheck passesadd-tool — scaffold a new MCP tool definition (use the canvas template above)api-config — full env var referenceapi-workers — Worker fail-closed behavior