scaffold

Scaffold

Use the Read tool to load skills/scaffold/data/guard-block.md BEFORE any other instruction in this file. The guard is load-bearing; it establishes the orchestrator role, blocks pre-dispatch deferrals, and contains the rationalization-red-flags STOP protocol.

Input: $ARGUMENTS = either add <component> (subcommand mode) OR project description (natural language) + optional flags

Step 0 — Subcommand dispatch

Read the first non-empty token of $ARGUMENTS. If it equals add, branch into the add <component> subcommand body (see ## Subcommand: add <component> at the end of this file). Otherwise, fall through to the new-project flow (Flag Parsing section below).

read -ra ARG_TOKENS <<< "$ARGUMENTS"
FIRST_TOKEN="${ARG_TOKENS[0]:-}"

if [ "$FIRST_TOKEN" = "add" ]; then
  # Subcommand mode — extend an existing project with a single component.
  COMPONENT="${ARG_TOKENS[1]:-}"
  if [ -z "$COMPONENT" ]; then
    echo "[ERROR] Usage: /agent-flow:scaffold add <component>" >&2
    echo "Supported components: claude-md | ci | docker | tests" >&2
    exit 1
  fi
  case "$COMPONENT" in
    claude-md|ci|docker|tests) ;;
    *)
      echo "[ERROR] Unknown component: ${COMPONENT}" >&2
      echo "Supported components: claude-md | ci | docker | tests" >&2
      exit 1
      ;;
  esac
  # Branch into the Subcommand body at the END of this file (## Subcommand: add <component>).
  # The subcommand branch MUST exit after step 6 (Report) and MUST NOT fall through to the new-project flow.
fi

# Otherwise: existing new-project flow continues with Flag Parsing below.

The add subcommand is a single-shot operation and does NOT use resume detection. The new-project flow does — see the resume detection invocation immediately after Flag Parsing / Mode Resolution below.

Flag Parsing

Parse $ARGUMENTS for these flags:

Flag	Variable	Notes
--template <path>	template_path
--spec <path>	spec_path
--issue <ID>	issue_id
--no-implement	no_implement = true
--yolo	GOT_YOLO = true	B6 mode flag
--step-mode	GOT_STEP_MODE = true	B6 mode flag
--lang <v>	preset_lang
--framework <v>	preset_framework
--db <v>	preset_db
--ci <v>	preset_ci
--brainstorm	brainstorm = true
--infra <v>	infra_preset	See validation below

Remainder after removing flags = project description.

Flag Validation

If both --yolo and --step-mode are set: → Error: "Flags --yolo and --step-mode are mutually exclusive. Use one or neither."

If more than one of (--spec, --template, --issue) provided: → Error: "Only one input source allowed. Use --spec, --template, or --issue."

If --no-implement AND any of (--spec, --template, --issue): → Error: "--no-implement skips specification phase. Remove --spec/--template/--issue or remove --no-implement."

If --brainstorm AND --spec: → Error: "--brainstorm is for exploring ideas. Use --spec when you already have a specification."

If --infra provided:

• Single word {ready|later} → expand to tracker:{value},sc:{value}
• Named pairs tracker:{ready|later},sc:{ready|later} (or reversed) → parse as-is
• Old positional {ready|later},{ready|later} → Error: "--infra format changed. Use: --infra tracker:ready,sc:later"
• Otherwise → Error: "Invalid --infra format. Expected: --infra tracker:ready,sc:later"

If --infra provided AND tracker value is later AND --issue provided: → Error: "--issue requires tracker access. Use --infra tracker:ready,sc:{v} or remove --issue."

If no project description AND no --spec AND no --template AND no --issue AND not --no-implement: → Ask user for project description.

Mode Resolution

if GOT_YOLO:    MODE = "yolo"
elif GOT_STEP:  MODE = "step-mode"
else:           MODE = "default"

MODE is passed as context to all step dispatches. Steps use it to gate checkpoints and prompts.

Default mode behavior

In default mode, brainstorm triggers only for vague descriptions (heuristic: word count < 20 OR no technical term detected; see steps/01-mode-resolve.md for full heuristic). Long technical descriptions (>=20 words AND technical terms) skip brainstorm automatically. The heuristic requires BOTH conditions: word count AND technical term presence. Two checkpoints are always visible:

• Spec Checkpoint after Step 02 (spec-writer loop complete)
• Feature Plan Checkpoint after Step 04 (architect + decomposition complete)

--yolo mode behavior

--yolo enables yolo autonomous execution: no brainstorm (skip regardless of description vagueness), no Spec checkpoint, no Feature Plan checkpoint, no user prompts; all conditional gates skipped. Pipeline runs autonomously from description to final report with zero gates.

Step Dispatch

Read steps/ sub-files. Execute in order:

--no-implement path

If no_implement = true: execute legacy flow (scaffolder (with stack flags) → validate → git init → push if SC ready → report). See steps/03-scaffold.md L1–L6 section. EXIT after L6.

Full pipeline path

Step	File	Description
01	steps/01-mode-resolve.md	State detection, infra declaration (0-INFRA), MCP verification (0-MCP), brainstorm
02	steps/02-spec-write-review.md	spec-writer ↔ spec-reviewer loop + Spec Checkpoint
03	steps/03-scaffold.md	scaffolder agent, validate, git init, auto-fill CLAUDE.md, push (4d), tracker issues (4e)
04	steps/04-architect.md	architect agent, decomposition, AC coverage, Feature Plan Checkpoint
05	steps/05-fixer-reviewer-loop.md	fixer ↔ reviewer per subtask/batch, NEEDS_CLARIFICATION handling
06	steps/06-test.md	test-engineer per subtask + full-suite sweep
07	steps/07-spec-verify.md	spec-reviewer --verify, post-impl tracker comments, close issues
08	steps/08-final-report.md	pipeline accumulator, pipeline-completed webhook, final report

Each step receives: MODE, GOT_YOLO, GOT_STEP_MODE, all parsed flags and in-memory variables from prior steps.

See also: /agent-flow:scaffold validate (the validate subcommand) for read-only validation of an existing project (tool contract: Bash, Read, Glob, Grep only).

Resume Detection

Follow ../../core/resume-detection.md for resume detection logic. Inputs:

• ISSUE_ID — set to the scaffold run identifier (e.g. scaffold-{timestamp} derived from project description hash, or operator-supplied via state directory).
• MODE=single (scaffold is always single-pipeline; no batch).
• GOT_YOLO, GOT_STEP_MODE — from Mode Resolution section above.
• Webhook_URL, On_events — from Automation Config Notifications section.
• CLARIFICATION_TEXT — from --clarification "<text>" flag if provided on resume.

Outputs: RESUME_POINT, RESTORED_CONTEXT, PIPELINE_TYPE.

Post-resume MCP checkpoint check (scaffold-specific): After resume-detection returns, check for a pending MCP setup checkpoint. Derive STATE_FILE the same way as ../../core/resume-detection.md Step 2: STATE_FILE=".agent-flow/${ISSUE_ID}/state.json". Guard against missing file before reading:

STATE_FILE=".agent-flow/${ISSUE_ID}/state.json"
MCP_PENDING=""
if [ -f "$STATE_FILE" ]; then
  MCP_PENDING=$(grep -oE '"mcp_setup_pending"[[:space:]]*:[[:space:]]*(true|false)' "$STATE_FILE" \
                | grep -oE '(true|false)$' | head -1)
fi

If MCP_PENDING = "true": override RESUME_POINT = "0-mcp". Skip Step 01a and 01b (already completed; values restored from state.json). Re-enter Step 01c (MCP Verification) only. Clearing mcp_setup_pending is handled exclusively inside Step 01c (see steps/01-mode-resolve.md Step 01c) — do NOT clear it here.

If RESUME_POINT == "FRESH", proceed with the full new-project pipeline below. If RESUME_POINT is any other value, skip ahead to the corresponding scaffold step per the SCAFFOLD pipeline mapping (see ../../core/resume-detection.md Step 6 status branch and the legacy resume-ticket SCAFFOLD pipeline mapping).

The add <component> subcommand (Step 0 dispatch above) is single-shot and does NOT invoke resume detection.

Rules

• NEVER execute agents inline — always via Task tool (CONTRACT VIOLATION if violated)
• NEVER overwrite existing files without confirmation
• Agent Overrides: follow ../../core/agent-override-injector.md before each agent dispatch
• Block comments in scaffold context go to stdout, not issue tracker
• Always generate skeleton into temp directory — move only after successful validation
• In-memory infra values from Step 01 (tracker_type, sc_remote, etc.) must be passed to all downstream steps — NEVER re-read CLAUDE.md for these values (may still contain TODO markers)
• When running full pipeline (not --no-implement): spec/ is the single source of truth for all downstream agents

---

Infrastructure and MCP Setup

Step 0-INFRA — Infrastructure Declaration

Collect infrastructure readiness before pipeline begins.

If --infra flag was provided, parse named-key pairs:

• tracker:ready or tracker:later — extract tracker preset (tracker_preset)
• sc:ready or sc:later — extract sc preset (sc_preset)

Old positional format detection: if --infra ready,later or similar positional {tracker},{sc} detected → emit: "--infra format changed. Use: --infra tracker:ready,sc:later".

If --infra not provided, prompt user:

Infrastructure Declaration
--------------------------
Issue tracker available now?  [ready / later]
Source control remote set?    [ready / later]

Determine tracker_effective_status and sc_effective_status based on user answers or --infra values.

Four valid combinations:

Tracker	SC	Downstream behavior
ready	ready	Full integration — issues created, PRs pushed
ready	later	Issues created; no push
later	ready	Push only; no issue creation
later	later	Fully local — no tracker, no push

State persistence — write to state.json via ../../core/state-manager.md:

{
  "infrastructure": {
    "tracker_status": "<tracker_effective_status>",
    "sc_status": "<sc_effective_status>",
    "tracker_type": "<tracker_type>",
    "sc_remote": "<sc_remote>"
  }
}

(infrastructure.tracker_status and infrastructure.sc_status stored for resume.)

On resume: If pipeline is resumed and --infra flag is provided with new values:

• Compare tracker: and sc: values from --infra against values in state.json.
• If same values (no changes) — skip re-verification.
• If tracker or sc value upgraded (later → ready) — re-run 0-MCP to re-check MCP availability. Re-verification required: run Step 0-MCP again.
• If tracker or sc value downgraded (ready → later) — clear the related detail fields (tracker_type, sc_remote), set to null. Respect original choice; later → no action needed.
• If --infra not provided on resume — read persisted values from state.json; no re-check needed.

---

Step 0-MCP — MCP Canary Write Announcement

Path note: trackers.md lives in the plugin installation directory, not in the consuming project. Glob is used to handle CWD-context mismatch.

Resolve {trackers_md_path} once:

1. Glob .claude/plugins/**/docs/reference/trackers.md — if results, use first (prefer path containing .claude/plugins/ or agent-flow/)
2. Glob **/docs/reference/trackers.md — use first result if step 1 found nothing
3. Use docs/reference/trackers.md as last resort

If not found → [WARN] "trackers.md not found — using built-in defaults for this tracker type."

Canary write check — Inform user (informational, no Y/n confirmation for the canary test itself):

Running a canary write test to verify MCP server connectivity before starting pipeline...

Check mcp_available (follow ../../core/mcp-detection.md).

If mcp_available: false:

MCP server unavailable. Options:
  1. Configure now — run: /agent-flow:setup-mcp --tracker-type <type> --tracker-instance <url> --sc-remote <owner/repo>
     (Equivalent: /agent-flow:init --tracker-type <type>)
     Then restart this session and resume.
  2. Skip — continue without MCP (tracker and SC steps will be skipped).

After "Configure now" is chosen (interactive mode only — unreachable in --yolo):

1. Write to state.json (atomic, ../../core/state-manager.md): { "mcp_setup_pending": true, "mcp_pause_step": "0-MCP", "status": "paused" }
2. Fire pipeline-paused webhook if Webhook_URL is configured and pipeline-paused is in On_events (follow ../../core/post-publish-hook.md Section 4 pattern).
3. Display checkpoint: "STOP scaffold — restart Claude Code session and resume with /agent-flow:scaffold resume".

If user selects Skip: continue in local-only mode. Standard error message:

Cannot connect to your issue tracker or source control. Pipeline will run in local-only mode.

Follow ../../core/mcp-preflight.md for complete MCP pre-flight protocol.

---

Orchestration

Step 0 — Mode Selection (Step 0: Mode Selection)

Present user with three run modes:

Mode	Description
Interactive	Default: Spec Checkpoint after Step 02, Feature Plan Checkpoint after Step 04. Brainstorm offered for vague descriptions.
YOLO with checkpoint	Skip brainstorm; show Spec Checkpoint and Feature Plan Checkpoint but no other pauses.
Full YOLO	Fully autonomous: no brainstorm, no Spec checkpoint, no Feature Plan checkpoint, no user prompts. Pipeline runs to final report with zero gates.

Apply MODE selection to GOT_YOLO / GOT_STEP_MODE logic from Mode Resolution section.

---

--no-implement Legacy Flow

If no_implement = true: execute Legacy Flow (v3.x behavior).

L1: Step 0-INFRA (infrastructure declaration)
L2: Step 0-MCP (MCP canary write check)
L3: stack-selector agent → tech stack selection (stack-selector is a backward-compat alias)
L4: scaffolder agent → generate skeleton with stack flags (--lang, --framework, --db, --ci)
L5: Validate (build + lint)
L5b: Push to Remote if sc_effective_status = ready
L6: Report — v3.x format

EXIT pipeline after L6 — do not enter spec phase (spec-writer/spec-reviewer loop).

Report includes v3.x next steps:

Next steps:
- Create issues in your issue tracker for each feature
- Use /agent-flow:implement-feature to implement each feature

---

Step 02 — Spec Write/Review Loop

Spec iterations — run spec-writer ↔ spec-reviewer loop up to 5 iterations (Spec iterations max):

spec-writer → spec-reviewer → [APPROVE | REVISE → back to spec-writer]

Loop exits on APPROVE or when max_iterations exhausted (5 iterations max). On exhaustion → Block with reason.

Dispatch spec-writer:

Task(subagent_type='agent-flow:spec-writer', description='Write project specification',
     prompt='...project description, context, flags...')

Dispatch spec-reviewer:

Task(subagent_type='agent-flow:spec-reviewer', description='Review project specification',
     prompt='...spec content, iteration number...')

Write iteration count to state.json via ../../core/state-manager.md:

{ "spec": { "iteration": <N>, "status": "approved" } }

NEEDS_CLARIFICATION — if spec-writer raises a question during spec phase:

• Write asked_at: $asked_at to state.json clarification object (follow ../../core/state-manager.md)
• Pause pipeline and surface question to user
• Fire pipeline-paused webhook if configured (follow ../../core/agent-states.md):

  # Fire pipeline-paused webhook
  if [ -n "${Webhook_URL:-}" ] && printf '%s' "${On_events:-}" | grep -qF 'pipeline-paused'; then
    curl --proto "=http,https" --max-time 5 --retry 0 -X POST -H "Content-Type: application/json" \
      --arg event "pipeline-paused" \
      "$Webhook_URL"
  fi
  

• On answer: resume with answer injected into next spec-writer prompt

Spec Checkpoint (Interactive and YOLO-with-checkpoint modes): show spec summary, ask "Continue to scaffolding? [Y/n]".

---

Step 03 — Scaffold

Dispatch scaffolder agent:

Task(subagent_type='agent-flow:scaffolder', description='Generate project skeleton',
     prompt='...spec path, stack flags, {trackers_md_path}, mode...')

Validate output (build + lint). Write state:

{ "scaffold": { "status": "complete", "project_dir": "<path>" } }

Step 4d — Push to Remote: If sc_effective_status = ready, push to {sc_remote}. Read defaults from {trackers_md_path} Source Control table.

---

Step 4e — Create Tracker Issues

If tracker_effective_status = ready, create tracker issues from spec/epics/*.md. Optionally dispatch backlog-creator agent to organize stories into sprint-ready issues.

Read tracker defaults from {trackers_md_path} Instance & Project Defaults table.

Idempotency guard: Before creating, check if issue already exists (search by title). Skip if found — use existing issue ID. (Idempotency guard prevents duplicate epic creation.)

For each epic file:

1. Create an epic-level issue using epic title and description.
2. Split content on --- delimiter to identify story sections. Parse story headings: ### Story N.M: <title>.
   • Zero stories edge case: if no ### Story headings found → skip sub-issue creation for this epic.
3. For each story, create sub-issue:
   • If tracker supports native sub-issues: create as sub-issue of epic. (Refer to trackers.md Sub-Issue Capabilities table for native sub-issues support per tracker.)
   • Fallback (GitHub/Gitea): create standalone issue with title [{epic_title}] {story_title}. Add cross-reference to epic issue in story description.
4. Write back-reference comment to spec/epics/*.md: <!-- {TrackerType}: {STORY-ISSUE-ID} -->
5. Per-story failure: WARN + continue to next story.

Story back-reference format: STORY-ISSUE-ID placeholder used in back-reference writeback comment.

Optionally dispatch backlog-creator to organize stories into sprint-ready issues:

Task(subagent_type='agent-flow:backlog-creator', description='Create tracker backlog from spec epics',
     prompt='...spec/epics path, tracker_type, trackers_md_path, {trackers_md_path}...')

Accumulator pattern / Partial failure handling: Collect epic failures. On any WARN: Could not create tracker issue, log and continue.

After all epics, commit:

chore: link spec epics to tracker issues

Do NOT apply the On start set state transition when creating scaffold issues (backward compat).

Display: Created N tracker issues (S story failures).

Write to state.json:

{ "tracker_issues": { "created": <N>, "failed": <M> } }

---

Step 04 — Architect

Dispatch architect agent:

Task(subagent_type='agent-flow:architect', description='Create feature decomposition plan',
     prompt='...spec path, tracker_effective_status, trackers_md_path, {trackers_md_path}...')

Decompose spec into subtasks. Each subtask maps to maps_to: AC-{N}: {text}.

Feature Plan Checkpoint (Interactive and YOLO-with-checkpoint modes): show decomposition, ask "Begin feature implementation? [Y/n]".

---

Step 05 — Feature Implementation Loop

For each subtask in decomposition, run fixer ↔ reviewer loop:

Task(subagent_type='agent-flow:fixer', description='Implement feature subtask N',
     prompt='...subtask description, AC, spec path...',
     model='opus')

Task(subagent_type='agent-flow:reviewer', description='Review implementation for subtask N',
     prompt='...diff, AC, fixer output...',
     model='opus')

Follow ../../core/fixer-reviewer-loop.md for iteration logic (max 5 iterations per subtask).

NEEDS_CLARIFICATION during implementation — if fixer raises a question:

• Write asked_at: $asked_at to state.json clarification object
• Pause pipeline, surface question to user
• On answer: resume fixer with answer injected

Write state per subtask:

{ "fixer_reviewer": { "status": "approved", "iterations": <N>, "subtask": "<id>" } }

---

Step 06 — Tests

Dispatch test-engineer:

Task(subagent_type='agent-flow:test-engineer', description='Run tests for scaffold pipeline',
     prompt='...project dir, test command, spec path...')

Write state:

{ "test": { "status": "passed", "subtask": "<id>" } }

---

Step 07 — Spec Compliance

Run spec-reviewer in --verify mode to check implementation against spec.

Task(subagent_type='agent-flow:spec-reviewer', description='Verify implementation against spec',
     prompt='...spec path, implementation summary, --verify mode...')

---

Step 8: E2E Tests

Run test-engineer E2E suite:

Task(subagent_type='agent-flow:test-engineer', description='Run E2E test suite',
     prompt='...e2e framework, command, project dir...',
     model='sonnet')

---

Step 8b: Close Tracker Issues

If tracker_effective_status = ready, close all epic and story tracker issues.

Read On start set Done mapping from {trackers_md_path} State Transition Syntax table.

If state transitions config does not include a 'Done' mapping: → [WARN] "State transitions config does not include a 'Done' mapping — issues left open."

For each epic issue:

• Check if any subtasks are in blocked features list. If blocked → skip with message skipped (blocked subtasks).
• Transition epic issue to Done state.
• Close each story sub-issue individually for ALL tracker types (no cascade assumption).

Per-issue failure WARN: Could not transition issue {ID} to Done: {reason}.

Read back-reference comments from spec/epics/*.md to find issue IDs. Parse <!-- {TrackerType}: {STORY-ISSUE-ID} --> back-reference comments in spec/epics/*.md.

Guard: check tracker_effective_status before attempting any tracker calls. If tracker_effective_status != ready — skip this step; no back-reference needed.

Display: Transitioned N issues to Done. M skipped (blocked subtasks).

---

Step 9: Final Report

Summarize scaffold pipeline run:

Scaffold complete.
- Spec: spec/ directory (README.md, architecture.md, verification.md, epics/*.md)
- Project: <project_dir>
- issues closed: <N>
- Subtasks implemented: <N>
- Branch: <branch>

Write final state to state.json:

{ "pipeline": { "status": "complete", "outcome": "success" } }

---

Step Z — outcome:failed Handling

If any unrecoverable error occurs (repeated test failures, block from reviewer, scaffolder failure, spec loop exhaustion):

1. Write outcome to state.json:

   { "pipeline": { "status": "failed", "outcome:failed": true, "blocked_at": "<step>" } }
   

2. Output Block Comment to stdout:

   [agent-flow] 🔴 Pipeline Block
   Agent: scaffold
   Step: <step>
   Reason: <max 2 sentences>
   Detail: <error output>
   Recommendation: <what user should do>
   

3. Halt pipeline. Do NOT continue to next step.

---

Agent Dispatch Reference

All agents dispatched via Task tool only. Model assignments per ../../core/agent-override-injector.md:

Agent	Model	Dispatch Form
spec-writer	opus	Task(subagent_type='agent-flow:spec-writer', ...)
spec-reviewer	opus	Task(subagent_type='agent-flow:spec-reviewer', ...)
scaffolder	sonnet	Task(subagent_type='agent-flow:scaffolder', ...)
architect	opus	Task(subagent_type='agent-flow:architect', ...)
fixer	opus	Task(subagent_type='agent-flow:fixer', model='opus', ...)
reviewer	opus	Task(subagent_type='agent-flow:reviewer', model='opus', ...)
test-engineer	sonnet	Task(subagent_type='agent-flow:test-engineer', ...)
backlog-creator	sonnet	Task(subagent_type='agent-flow:backlog-creator', ...)

---

Subcommand: add

Activated when the first token of $ARGUMENTS is add (see Step 0 — Subcommand dispatch at the top of this file). Adds a single component (claude-md | ci | docker | tests) to an existing project. Single-shot — no resume detection, no spec phase, no architect, no fixer/reviewer loop.

Input: $COMPONENT = component name validated by Step 0 dispatch (one of claude-md | ci | docker | tests).

Supported components

Component	What it generates	Agent
claude-md	CLAUDE.md with Automation Config	scaffolder
ci	CI/CD config (.gitea/workflows/ or .github/workflows/)	scaffolder
docker	Dockerfile + .dockerignore + docker-compose.yml	scaffolder
tests	Test setup (test config + 1 smoke test)	scaffolder

0. MCP pre-flight check

Before any pipeline operation, verify MCP tool availability:

• Read Type from Automation Config (Issue Tracker section)
• Check that at least one mcp__* tool matching the tracker type is accessible
• If not accessible → STOP with: "Cannot connect to your {Type} issue tracker. Is the {Type} integration configured? Run /agent-flow:check-setup for diagnostics."

Orchestration

1. Argument validation

The Step 0 dispatch already validated $COMPONENT against the supported list (claude-md | ci | docker | tests). If reached here, $COMPONENT is one of the valid values.

2. Auto-detect tech stack

Detect the existing tech stack from project files:

• pyproject.toml / setup.py → Python
• package.json → Node.js/TypeScript
• go.mod → Go
• Cargo.toml → Rust
• *.csproj / *.sln → .NET
• pom.xml / build.gradle → Java

If detection fails → ask the user.

Detect framework from imports and dependencies:

• FastAPI, Flask, Django (Python)
• Express, Nest, Next.js (Node.js)
• Gin, Echo, Fiber (Go)

3. Confirmation

Display: "Detected stack: {language} + {framework}. Generating {component}. Continue? [Y/n]"

4. Generation

You MUST invoke Task(subagent_type='agent-flow:scaffolder', model='sonnet'). DO NOT inline-execute.

• Context: detected stack + requested component ($COMPONENT)
• Scaffolder generates ONLY the requested component

5. Validation

Verify that newly generated files did not break the build:

• Run build command (if it exists in CLAUDE.md or from auto-detect)
• Run test command (if it exists)
• If Build/Test command does not exist, at least verify syntactic validity of generated configuration files (JSON/YAML parsing).

6. Report

Display the list of generated files and next steps.

EXIT after step 6. The subcommand branch MUST NOT fall through to the new-project flow.

Subcommand Rules

• Never overwrite existing files without confirmation
• For claude-md: if CLAUDE.md already exists → ask whether to overwrite or merge
• Auto-detect looks in root first, then one level of subdirectories
• If multiple matches (mixed-language repo) → ask the user for the primary stack