By thuyhuongctu
Academic paper research pipeline: fetch → Zotero → Obsidian wiki
Use when user wants queryable YAML frontmatter on Obsidian paper notes so they can use the Dataview plugin to filter, sort, or display papers as tables. Runs alongside paper-note, paper-moc, or paper-wiki. Use when user says "add metadata to my notes" or "I want to query my papers with Dataview".
Use when user wants to search for academic papers by keywords or topic, or download specific papers from a DOI/URL list. Triggers when user says "find papers on X", "search for research about Y", "get these papers" with a DOI list, or when paper-research calls this sub-skill.
Use when user wants a topic overview or index page in Obsidian that aggregates multiple related papers. Use when user says "create a map of content for my papers on X", "give me an overview of these papers", or when paper-research calls this sub-skill.
Use when user wants a structured summary note in Obsidian for one or more academic papers. Use when user says "summarize this paper", "create a note for this paper in Obsidian", or when paper-research calls this sub-skill after importing to Zotero.
Use when user wants to run the full academic paper research pipeline from finding papers through to structured Obsidian output. Use when user says "research papers on X", "help me collect literature on Y", "batch process these papers", or "set up my paper workflow".
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A modular Claude Code skill for the full academic paper research pipeline:
search / download → Zotero → Obsidian wiki
npx skills add Geek96/paper-research-skill
Install these MCP tools before use:
| Tool | Purpose | Link |
|---|---|---|
openags/paper-search-mcp | Search arXiv, PubMed, Semantic Scholar + download PDFs | GitHub |
Xevos117/mcp-zotero | Import papers to Zotero by DOI or PDF | GitHub |
MarkusPfundstein/mcp-obsidian | Read/write Obsidian vault | GitHub |
AgriciDaniel/claude-obsidian | Karpathy wiki pattern (for paper-wiki only) | GitHub |
Quick install for paper-search-mcp:
npx -y @smithery/cli install @openags/paper-search-mcp --client claude
paper-research — Full pipeline orchestrator. Start here.| Skill | Trigger example |
|---|---|
paper-fetch | "Find papers on X" / provide DOI list |
paper-zotero | "Import these papers to Zotero" |
paper-note | "Summarize this paper in Obsidian" |
paper-moc | "Create a topic overview for my papers on X" |
paper-wiki | "Add these papers to my wiki" |
paper-dataview | "Add Dataview metadata to my notes" |
User input (keywords or DOI list)
↓
paper-fetch → candidate list → user selects
↓
paper-zotero → Zotero library
↓
paper-research asks: which Obsidian output?
↓
paper-note / paper-moc / paper-wiki / paper-dataview (choose one or more)
> Research the latest papers on RAG for code generation, last 2 years
> Import these 5 DOIs to Zotero and create wiki entries
> Summarize this PDF and create a note in my Obsidian vault
MIT © Geek96
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