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By shakestzd
Quarto-based academic manuscript pipeline for journal submission. Scaffolds projects, builds publication-ready tables, detects AI writing tells, and generates upload packages. Agents: ai-tell-fixer, manuscript-reviewer, table-builder. Skills: manuscript-setup, build-upload, journal-compliance.
npx claudepluginhub shakestzd/quartopress --plugin quartopressBuild the complete journal upload package (manuscript, tables, figures) from source files.
Scan and fix AI writing tells in manuscript .qmd files. Runs the ai-tell-fixer agent in parallel on all section files.
Detect and fix common manuscript rendering issues before building — double titles, wrong template, stale cross-refs, broken figure/table numbering, and inconsistent terminology.
Configure a manuscript .qmd file to use a specific journal template (PRS, JPRAS, or Annals).
You are an AI-tell detector and fixer for scientific manuscripts. You identify and replace linguistic markers that signal AI-generated text, producing natural human-sounding academic prose without changing meaning.
You are a manuscript reviewer for academic journal submissions. You systematically verify that a manuscript section meets journal requirements, addresses reviewer concerns, and follows formatting standards.
You are a publication table builder. You generate journal-compliant Word tables from data using `prs_table_builder.py`.
Generate a complete journal upload package from Quarto manuscript sources and data files.
Verify a manuscript meets journal-specific submission requirements before upload.
Scaffold a new or augment an existing Quarto-based manuscript project for journal submission.
Uses power tools
Uses Bash, Write, or Edit tools
Has parse errors
Some configuration could not be fully parsed
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Publication-ready tables and manuscript pipeline for Quarto-based academic projects.
# As a Python package
uv add quartopress
# As a Claude Code plugin
/plugin install github:shakestzd/quartopress
quartopress-init ./my-manuscript --title "My Study" --journal prs
from quartopress import TableSpec, build_prs_document
# From CSV
spec = TableSpec.from_csv("data.csv", label="Table 1. Demographics")
# From explicit rows
spec = TableSpec(
label="Table 2. Results",
headers=["Metric", "Value"],
rows=[("Sensitivity", "99.3%"), ("Specificity", "84.4%")],
)
# Generate Word document with three-line table formatting
build_prs_document(
title_bold="Table 1. ",
title_text="Patient Demographics",
tables=[spec],
output_path="Table 1.docx",
)
cd my-manuscript
uv run python scripts/build_upload.py
When installed as a plugin, quartopress provides:
| Component | Description |
|---|---|
| ai-tell-fixer agent | Detects and fixes AI writing markers (em-dashes, "Furthermore", "delve", etc.) |
| manuscript-reviewer agent | Reviews sections against journal requirements and reviewer comments |
| table-builder agent | Generates publication-ready Word tables from CSV data |
| manuscript-setup skill | Scaffolds a new Quarto manuscript project |
| build-upload skill | Generates complete journal upload packages |
| journal-compliance skill | Validates manuscript against journal requirements |
/build-manuscript command | Runs the full build pipeline |
Tables use the standard three-line academic format:
Supports landscape orientation, section headers within tables, and multi-table documents.