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Complete project lifecycle toolkit: initialization, epic/sprint workflow, CI/CD scaffolding, Docker packaging, security auditing, and document processing
npx claudepluginhub neuromechanist/research-skills --plugin projectProcess documents with OCR, text extraction, and conversion
Orchestrate multi-phase feature development using git worktrees, GitHub issues with sub-issues, and phased PR delivery. Load the `project:workflow-reference` skill immediately for reference context.
Show current epic/sprint workflow state
Initialize a new project with vibe-rules templates for Claude
Prepare a project release with version bump, changelog, and validation
Use this agent to audit project dependencies for vulnerabilities, outdated packages, and compatibility issues. Triggers on "audit dependencies", "check for vulnerabilities", "update dependencies", "dependency security", or when reviewing project health.
Use this agent to autonomously prepare a project release by running pre-release checks, validating CI, checking test coverage, and verifying changelog. Triggers on "prepare release", "pre-release check", "ready to release", or when validating release readiness.
This skill should be used when the user says "set up CI", "create GitHub Actions", "scaffold CI pipeline", "add CI/CD", "configure continuous integration", "create test workflow", "create release workflow", "add pre-commit hooks", "set up linting pipeline", "configure ruff in CI", "configure biome in CI", "add typo checking", or wants to add, update, or customize CI/CD pipelines for their project. For initial project setup including basic CI, see init-project. Use ci-scaffolding for adding or customizing CI/CD in existing projects.
This skill should be used when the user says "create Dockerfile", "dockerize project", "Docker packaging", "container setup", "multi-stage build", "Docker Compose", "containerize application", "create docker-compose.yml", "create .dockerignore", "optimize Docker image", or wants to containerize their project or create Docker configurations.
This skill should be used when the user says "process documents", "extract text from PDF", "OCR this document", "convert PDF to markdown", "extract emails from documents", "parse document", "document conversion", "batch OCR", "extract structured data from PDF", "read PDF", "extract tables from PDF", "convert Word document", "convert docx to markdown", or wants to extract, convert, or process documents and scanned images.
Use this skill for "initialize project", "set up project", "scaffold project", "create CLAUDE.md", "set up rules", "create context directory", "vibe rules", "project templates", "init new project", "set up development structure", "create .rules", "create .context", "project scaffolding", "set up pre-commit hooks", or when the user wants to initialize a new project with Claude/Cursor development templates and structured documentation.
This skill should be used when the user says "security audit", "check for vulnerabilities", "security review", "harden project", "dependency audit", "credential scan", "check for secrets", "scan for secrets", "OWASP review", "security checklist", "audit dependencies", "find vulnerabilities", or wants to review their project for security issues, exposed credentials, or vulnerable dependencies.
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Complete grant proposal toolkit: NIH/NSF proposal writing, structured review with scoring criteria, and figure quality assurance
Research-team agents for Claude Code: supervisor, analysis-implementer, paper-writer, figure-descriptor, reviewer, literature-curator.
Oh My Paper research harness: memory system, Codex delegation, and pipeline commands for academic research projects.
Semi-automated research assistant for academic research and software development, with skills for literature review, experiments, analysis, writing, and project knowledge management
Research integrity plugin for Claude Code — paper auditing, citation verification, experiment analysis, and methodology-first skills for academic workflows.
Comprehensive skill pack with 66 specialized skills for full-stack developers: 12 language experts (Python, TypeScript, Go, Rust, C++, Swift, Kotlin, C#, PHP, Java, SQL, JavaScript), 10 backend frameworks, 6 frontend/mobile, plus infrastructure, DevOps, security, and testing. Features progressive disclosure architecture for 50% faster loading.
Academic literature search, citation management, PDF retrieval, and literature review synthesis
Complete grant proposal toolkit: NIH/NSF proposal writing, structured review with scoring criteria, and figure quality assurance
Academic manuscript toolkit: peer review, manuscript writing, and journal-specific formatting for submission
Neuroscience data standards and experiment design: BIDS conversion/validation, HED annotation, and PsychoPy experiment scaffolding
Academic literature search, citation management, and PDF retrieval using the opencite CLI
Claude Code marketplace for academic research workflows and development tooling. Install individual plugins for literature search, grant proposals, manuscript preparation, scientific figures, project lifecycle management, and neuroinformatics.
In Claude Code, type /plugin, select Add marketplace, enter:
neuromechanist/research-skills
Then select which plugins to install. Each plugin is independent.
claude plugin marketplace add neuromechanist/research-skills
for p in project grant manuscript opencite scientific-figures neuroinformatics; do
claude plugin install "$p@research-skills"
done
| Plugin | Version | Description | Commands |
|---|---|---|---|
| project | 0.2.0 | Project lifecycle: init, workflow, CI/CD, Docker, security, doc-processing | /init-project, /epic-dev, /epic-status, /setup-ci, /release-prep, /doc-process |
| grant | 0.2.0 | NIH/NSF grant proposal writing, review, and figure QA | /grant-write, /grant-review |
| manuscript | 0.2.0 | Academic manuscript peer review, writing, and journal formatting | /paper-review, /manuscript-prep |
| opencite | 0.2.0 | Literature search, citation management, PDF retrieval, literature review synthesis | /opencite |
| scientific-figures | 0.1.1 | Full figure pipeline: icons, plots, composition, visual QA | -- |
| neuroinformatics | 0.1.0 | BIDS conversion/validation, HED annotation, PsychoPy experiment design | /convert-bids, /validate-bids, /design-experiment |
Search academic literature, explore citation graphs, download PDFs, and export BibTeX. Wraps the opencite CLI, aggregating Semantic Scholar, OpenAlex, PubMed, arXiv, and bioRxiv. Includes a literature-review skill for synthesizing papers into cohesive reviews with thematic organization and gap analysis.
/opencite search "motor cortex oscillations"
"Find the top 10 most cited papers on brain-computer interfaces"
"Write a literature review on EEG-based BCIs"
Draft and review NIH and NSF grant proposals with mechanism-specific templates (R01, R21, K99, CAREER, etc.). Includes a grant-figure-qa agent that autonomously checks figures for resolution, accessibility, and NIH/NSF compliance. Skills for research strategy guidelines, writing style, budget justification, scoring criteria, and resubmission response.
/grant-write significance --mechanism R01
/grant-review proposal.pdf --mechanism R21
Academic manuscript toolkit covering the full lifecycle: writing guidance (IMRAD structure, section templates), peer review (methodology, statistics, reproducibility), and journal-specific formatting (IEEE, Nature, PNAS, Elsevier, LaTeX/BibTeX management). Includes revision response templates.
/paper-review manuscript.pdf
/manuscript-prep "Nature Neuroscience"
Create publication-quality figures for Nature, Science, PNAS, Cell, and other journals:
All elements saved as SVG or transparent PNG. Enforces sans-serif fonts, colorblind-safe palettes, and journal-specific dimensions. Runs on-the-fly via uvx and bunx.
Neuroscience data standards, experiment design, and dataset validation:
/convert-bids ./raw-data --modality eeg --task rest
/validate-bids ./bids-dataset
/design-experiment "visual oddball ERP paradigm with 2 conditions"
Complete project lifecycle toolkit combining initialization, epic/sprint workflow, and CI/CD management: