PhenoML Skills
A collection of Claude Code plugins and skills that enable developers to rapidly build and test healthcare data workflows using PhenoML. These interactive skills provide guided, conversational experiences for using PhenoML APIs.
What's Included
Plugins
- phenoml-workflow - Create and execute PhenoML workflows for healthcare data processing
- rwe-analyze - Conduct RWE analysis on FHIR!
Skills
- phenoml-workflow - Interactive skill for:
- Setting up FHIR provider connections
- Creating workflows
- Testing workflows with example data
- Managing and executing healthcare data pipelines
Getting Started
Prerequisites
- Claude Code CLI installed
- Python 3.x
- PhenoML account credentials
- FHIR provider credentials (Medplum, Athena, Epic, Cerner, etc.)
- Best practices: Update your
.claude/settings.json to ensure sensitive files can't be accessed (example provided in this repo)
- IMPORTANT: This plugin is designed for development purposes ONLY. Claude Code provides details on how to configure for various enterprise requirements that you may wish to review.
Installation for use in CLI
- Start Claude Code in your terminal
claude
- Add the marketplace
/plugin marketplace add PhenoML/phenoml-skills
- Install the plugin
/plugin install phenoml-workflow@phenoml-skills
Installation for use in VS Code
-
In the chat input, type / to open the command menu.
-
Select Manage Plugins
-
Click Marketplaces
-
Paste the repo URL: https://github.com/PhenoML/phenoml-skills
-
Click Install
-
PhenoML Skills will now appear in your Plugins list!
PhenoML