Microsoft 365 Security

Microsoft 365 Security Posture

Overview

Security checks are among the most high-value tasks an MSP can perform in a customer's M365 tenant. Account compromises, inadequate MFA coverage, and misconfigured mail rules are the leading causes of M365 security incidents. This skill covers the key checks and indicators that separate a secure tenant from a vulnerable one.

MFA Status Audit

Check All Users' Authentication Methods

MFA enrollment lives on the authentication/methods endpoint per user. Users with only a passwordAuthenticationMethod entry have no MFA.

GET /v1.0/users/{userId}/authentication/methods

Response — user WITH MFA:

{
  "value": [
    {
      "@odata.type": "#microsoft.graph.microsoftAuthenticatorAuthenticationMethod",
      "id": "aad-method-id",
      "displayName": "iPhone",
      "createdDateTime": "2023-06-01T10:00:00Z"
    },
    {
      "@odata.type": "#microsoft.graph.passwordAuthenticationMethod"
    }
  ]
}

Response — user WITHOUT MFA (vulnerable):

{
  "value": [
    {
      "@odata.type": "#microsoft.graph.passwordAuthenticationMethod"
    }
  ]
}

Bulk MFA Report

Use Microsoft Graph Reports for tenant-wide MFA status:

GET /v1.0/reports/authenticationMethods/userRegistrationDetails

Response per user:

{
  "id": "user-guid",
  "userPrincipalName": "[email protected]",
  "isMfaRegistered": true,
  "isMfaCapable": true,
  "isSsprRegistered": false,
  "methodsRegistered": ["microsoftAuthenticator", "softwareOath"]
}

This is the fastest path to a full tenant MFA audit.

MFA Method Risk Levels

Method	Security Level	Notes
FIDO2 hardware key	Highest	Phishing-resistant
Windows Hello for Business	Highest	Device-bound
Microsoft Authenticator (passwordless)	High	Number matching recommended
OATH hardware token	High
Microsoft Authenticator (OTP)	Medium	Better than SMS
Software OATH (other app)	Medium
SMS/Phone	Low	Susceptible to SIM swap
Password only	None	Unacceptable for business

Sign-In Risk and Risky Users

Get Risky Users (Entra ID P2 Required)

GET /v1.0/identityProtection/riskyUsers?$filter=riskState eq 'atRisk'&$select=id,userPrincipalName,riskLevel,riskState,riskLastUpdatedDateTime

Risk Levels: low, medium, high

Get Risky Sign-Ins

GET /v1.0/auditLogs/signIns?$filter=riskLevelDuringSignIn ne 'none'&$select=userPrincipalName,riskLevelDuringSignIn,location,createdDateTime&$top=50

Dismiss Risk for a User (After Remediation)

POST /v1.0/identityProtection/riskyUsers/dismiss
Content-Type: application/json

{
  "userIds": ["user-guid"]
}

Get Recent Sign-In Logs

GET /v1.0/auditLogs/signIns?$filter=userPrincipalName eq '[email protected]'&$select=createdDateTime,userPrincipalName,ipAddress,location,status,clientAppUsed,riskLevelDuringSignIn&$top=20&$orderby=createdDateTime desc

Key fields for incident response:

• status.errorCode: 0 = success, nonzero = failure
• ipAddress and location for geolocation anomalies
• clientAppUsed — legacy auth clients are high risk
• conditionalAccessStatus: notApplied = CA policy gap

Suspicious Inbox Rules

Attackers often create hidden inbox rules to forward mail or hide replies. Check for:

GET /v1.0/users/{userId}/mailFolders/inbox/messageRules

Red flags:

• Rules forwarding to external addresses
• Rules deleting messages matching keywords ("invoice", "password", "wire transfer")
• Rules moving messages to obscure folders
• Rules created at unusual times

{
  "displayName": "hidden rule",
  "conditions": { "subjectContains": ["invoice"] },
  "actions": { "forwardTo": [{ "emailAddress": { "address": "[email protected]" } }] },
  "isEnabled": true
}

Legacy Authentication

Legacy auth protocols (IMAP, POP3, SMTP AUTH, basic auth) bypass MFA. Identify users still using them:

GET /v1.0/auditLogs/signIns?$filter=clientAppUsed eq 'IMAP' or clientAppUsed eq 'POP3' or clientAppUsed eq 'Exchange ActiveSync'&$select=userPrincipalName,clientAppUsed,createdDateTime&$top=100

Recommended: Block legacy auth via Conditional Access policy.

Conditional Access Overview

Check if CA policies are configured:

GET /v1.0/identity/conditionalAccess/policies?$select=id,displayName,state,conditions,grantControls

state values: enabled, disabled, enabledForReportingButNotEnforced (report-only)

MSP baseline CA policies to verify exist:

1. Require MFA for all users
2. Block legacy authentication protocols
3. Require compliant device for admin roles
4. Block sign-in from high-risk countries (optional)

Security Score

Get the tenant's Microsoft Secure Score:

GET /v1.0/security/secureScores?$top=1

Response:

{
  "value": [{
    "currentScore": 52.4,
    "maxScore": 120.0,
    "averageComparativeScores": [
      { "basis": "AllTenants", "averageScore": 38.2 }
    ]
  }]
}

Score improvement recommendations:

GET /v1.0/security/secureScoreControlProfiles?$select=title,maxScore,implementationStatus,controlCategory

Account Compromise Indicators

When a user reports suspicious activity, check these in order:

Check	Command	Red Flag
Recent sign-ins	GET /auditLogs/signIns	Unfamiliar IP, country, time
MFA changes	GET /auditLogs/directoryAudits	MFA method added/removed
Inbox rules	GET /mailFolders/inbox/messageRules	External forwarding
Sent items	GET /messages from Sent folder	Phishing sent from account
OAuth apps	GET /oauth2PermissionGrants	Unknown app granted access

Full Compromise Response Checklist

1. Revoke sessions: POST /v1.0/users/{id}/revokeSignInSessions
2. Reset password via admin center (forces re-auth)
3. Remove suspicious inbox rules
4. Review mail sent in the compromised window
5. Check OAuth app consents and revoke suspicious ones
6. Notify user and require MFA re-enrollment
7. File incident in PSA with timeline

Permissions Required

Task	Microsoft Graph Permission
MFA registration report	UserAuthenticationMethod.Read.All
Authentication methods	UserAuthenticationMethod.Read.All
Sign-in logs	AuditLog.Read.All
Risky users	IdentityRiskyUser.Read.All (P2)
Conditional access	Policy.Read.All
Security score	SecurityEvents.Read.All
Revoke sessions	Directory.ReadWrite.All

Related Skills

• M365 Users - Disable account, revoke sessions
• M365 Mailboxes - Inbox rule details, send-on-behalf audit
• M365 API Patterns - Auth, audit log query patterns