Tool Executor Configuration

Configure which MCP servers are available in the Tool Executor sandbox. Serena is mandatory and cannot be removed.

Architecture Overview

tool-executor.config.json  →  clients.ts loads configs  →  Sandbox exposes clients
                                    ↓
                           npm run extract  →  registry/ YAML files

Configuration File

Create tool-executor.config.json in the project root:

{
  "$schema": "./tool-executor.config.schema.json",
  "servers": [
    {
      "name": "serena",
      "displayName": "Serena",
      "command": "uvx",
      "args": ["--from", "git+https://github.com/oraios/serena", "serena", "start-mcp-server"]
    },
    {
      "name": "gemini",
      "displayName": "Gemini",
      "command": "npx",
      "args": ["-y", "@rlabs-inc/gemini-mcp"],
      "env": {
        "GEMINI_API_KEY": "${GEMINI_API_KEY}"
      }
    }
  ]
}

Config File Locations (checked in order)

1. tool-executor.config.json
2. tool-executor.config.js
3. .tool-executorrc.json

Adding a New MCP Server

Step 1: Add to Configuration

{
  "servers": [
    // ... existing servers ...
    {
      "name": "newServer",
      "displayName": "New Server",
      "command": "npx",
      "args": ["-y", "@example/new-mcp-server"],
      "env": {
        "API_KEY": "${NEW_SERVER_API_KEY}"
      }
    }
  ]
}

Step 2: Add Type Definition

Edit src/types.ts to add the client type:

export interface MCPClients {
  serena: Client | null;
  // ... existing clients ...
  newServer: Client | null;  // Add this
}

Step 3: Regenerate Registry

npm run extract

This connects to all configured MCP servers and generates YAML files in registry/.

Step 4: Rebuild and Restart

npm run build
# Restart Claude Code to pick up new MCP server

Removing an MCP Server

WARNING: Serena cannot be removed - it powers both search_tools and is available in the sandbox.

Step 1: Remove from Configuration

Delete the server entry from tool-executor.config.json.

Step 2: Remove Type Definition

Remove from src/types.ts MCPClients interface.

Step 3: Clean Registry

rm -rf registry/{category}/{serverName}/
npm run extract  # Regenerate remaining

Step 4: Rebuild

npm run build

Environment Variables

Setting Environment Variables

Environment variables use ${VAR_NAME} syntax in config:

{
  "env": {
    "GEMINI_API_KEY": "${GEMINI_API_KEY}",
    "CUSTOM_VAR": "${MY_CUSTOM_VAR}"
  }
}

Required Environment Variables

Server	Variable	Purpose
gemini	GEMINI_API_KEY	Google AI API key
apify	APIFY_TOKEN	Apify platform token

Setting Variables

In Claude Code config (~/.claude.json):

{
  "mcpServers": {
    "tool-executor": {
      "env": {
        "GEMINI_API_KEY": "your-key-here",
        "APIFY_TOKEN": "your-token-here"
      }
    }
  }
}

Or in shell:

export GEMINI_API_KEY="your-key-here"

Registry Management

Registry Structure

registry/
├── ai-models/gemini/          # Gemini tools (AI queries, images, diagrams)
├── code-nav/serena/           # Serena tools
├── knowledge/context7/        # Context7 tools
├── knowledge/notebooklm/      # NotebookLM tools
├── reasoning/sequentialThinking/
├── ui/shadcn/                 # shadcn tools
└── web/apify/                 # Apify tools

YAML Tool Definition Format

name: tool_name
server: serverName
category: category-folder
description: >-
  What the tool does. Can be multi-line.

inputSchema:
  type: object
  properties:
    param1:
      type: string
      description: Parameter description
  required:
    - param1

example: |
  const result = await serverName.tool_name({ param1: "value" });
  console.log(result);

notes: |
  - Optional tips
  - Gotchas to be aware of

Manual Registry Entry

If npm run extract fails for a server, create YAML files manually:

mkdir -p registry/{category}/{serverName}

Then create registry/{category}/{serverName}/{tool-name}.yaml with the format above.

Re-indexing for Serena Search

Serena indexes the registry for semantic search. If search results seem stale:

# Re-run extraction to refresh YAML files
npm run extract

# Rebuild to pick up changes
npm run build

Default Server Configurations

These are the built-in defaults if no config file exists:

Name	Command	Package
serena	uvx	git+https://github.com/oraios/serena
context7	npx	@upstash/context7-mcp
gemini	npx	@rlabs-inc/gemini-mcp
notebooklm	npx	notebooklm-mcp
shadcn	npx	shadcn-ui-mcp-server
apify	npx	@apify/actors-mcp-server
sequentialThinking	npx	@modelcontextprotocol/server-sequential-thinking

Source Code Reference

• ${CLAUDE_PLUGIN_ROOT}/src/sandbox/clients.ts - Client configuration and lifecycle
• ${CLAUDE_PLUGIN_ROOT}/src/config.ts - Config file loading
• ${CLAUDE_PLUGIN_ROOT}/src/types.ts - Type definitions
• ${CLAUDE_PLUGIN_ROOT}/scripts/extract-schemas.ts - Registry generation