Restructure an existing project into the standard directory/file blueprint with backups.
## Goal Upgrade an existing project to the canonical layout while preserving data by creating a timestamped backup and normalizing directories. ## Preparation 1. Gather `root` (project path), `backup` (default true), `remove_nonstandard` (default true), and `force` flags. 2. Verify the directory exists via `ls "$root"`; abort with actionable error if missing. 3. Load required directories/files from `../config/config.json -> standard_structure`. ## Execution 1. **Backup (if enabled)** Report backup path. 2. **Create missing directories** Loop through required list and run `mkdir ...